Stem-loop dme-mir-276b

Accession

MI0000375

Description

Drosophila melanogaster dme-mir-276b precursor miRNA

Gene family

MIPF0000124; mir-276

Literature search

12 open access papers mention dme-mir-276b
(36 sentences)

Sequence

751067 reads, 14614 reads per million, 49 experiments

aaaaccgaagucuuuuuaccauCAGCGAGGUAUAGAGUUCCUACGuuccuauauucagucgUAGGAACUUAAUACCGUGCUCUuggaggacugucgacc
.....(((((((((....(((..((((.(((((.(((((((((((..............))))))))))).))))).))))..))))))))).)))...

Structure

aaaac   -      uuua   uC    A     A           uuccua 
     cga agucuu    cca  AGCG GGUAU GAGUUCCUACG      u
     ||| ||||||    |||  |||| ||||| |||||||||||       
     gcu ucagga    ggu  UCGU CCAUA UUCAAGGAUgc      a
--cca   g      ----   UC    G     A           ugacuu 

Annotation confidence High

Genome context

chr3L: 10319785-10319883 [+]

Mature dme-miR-276b-3p

• Accession: MIMAT0000354
• Description: Drosophila melanogaster dme-miR-276b-3p mature miRNA
• Sequence: 62 - UAGGAACUUAAUACCGUGCUCU - 83
• Evidence: experimental ; Northern [1], cloned [2], 454 [3-4], Illumina [4]

Mature dme-miR-276b-5p

• Accession: MIMAT0020815
• Description: Drosophila melanogaster dme-miR-276b-5p mature miRNA
• Sequence: 23 - CAGCGAGGUAUAGAGUUCCUACG - 45
• Evidence: experimental ; Northern [1], 454 [3-4], Illumina [4]

References

1. PubMed ID: 12919683
   The small RNA profile during Drosophila melanogaster development
   "Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T"
   "Dev Cell (2003) 5:337-350


2. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


3. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879


4. PubMed ID: 12844358
   Computational identification of Drosophila microRNA genes
   "Lai EC, Tomancak P, Williams RW, Rubin GM"
   "Genome Biol (2003) 4:R42