Stem-loop sequence dme-mir-276b

Accession

MI0000375 (change log)

Description

Drosophila melanogaster miR-276b stem-loop

Gene family

MIPF0000124; mir-276

Literature search

12 open access papers mention dme-mir-276b
(33 sentences)

Stem-loop

   aaaac   -      uuua   uc    a     a           uuc  au 
5'      cga agucuu    cca  agcg gguau gaguuccuacg   cu  a
        ||| ||||||    |||  |||| ||||| |||||||||||   ||   
3'      gcu ucagga    ggu  ucgu ccaua uucaaggaugc   ga  u
   --cca   g      ----   uc    g     a           --u  cu 

Deep sequencing

5845860 reads, 5.93e+04 reads per million, 49 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chr3L: 10319785-10319883 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS0000596B95_7227
• miRBase Tracker:MI0000375

Mature sequence dme-miR-276b-5p

• Accession: MIMAT0020815
• Sequence: 23 - cagcgagguauagaguuccuacg - 45
• Deep sequencing: 220380 reads, 49 experiments
• Evidence: experimental; Northern [1], 454 [3-4], Illumina [4]
• Database links:
  • RNAcentral:URS00001E7A02_7227

Mature sequence dme-miR-276b-3p

• Accession: MIMAT0000354
• Previous IDs: dme-miR-276b
• Sequence: 62 - uaggaacuuaauaccgugcucu - 83
• Deep sequencing: 5625476 reads, 49 experiments
• Evidence: experimental; Northern [1], cloned [2], 454 [3-4], Illumina [4]
• Database links:
  • RNAcentral:URS00003204D8_7227
• Predicted targets:
  • TargetScanFly:dme-miR-276b
  • microrna.org:dme-miR-276b-3p

References

1. PMID:12844358 "Computational identification of Drosophila microRNA genes" Lai EC, Tomancak P, Williams RW, Rubin GM Genome Biol. 4:R42(2003).
2. PMID:12919683 "The small RNA profile during Drosophila melanogaster development" Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T Dev Cell. 5:337-350(2003).
3. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
4. PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).