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miRBase |
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Stem-loop sequence dme-mir-219 |
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Accession | MI0000358 (change log) | ||||
Description | Drosophila melanogaster miR-219 stem-loop | ||||
Gene family | MIPF0000044; mir-219 | ||||
Literature search |
6 open access papers mention dme-mir-219 | ||||
Stem-loop |
---ua -g u ua u aa ---- a 5' auuc auuuu agc ugau gucca cgcaauucuug uug u |||| ||||| ||| |||| ||||| ||||||||||| ||| a 3' uaag uaaag ucg gcua cgggu gcguugggaac aac u caaca aa c gc - ca uuau u |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
This sequence is computationally predicted based on conservation in D. pseudoobscura [1]. The sequence of the excised miR is strikingly conserved in human (MI0000296), but the expression of the miR has not been confirmed in fly and the precise 5' or 3' ends are unknown. |
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Genome context |
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Database links |
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Mature sequence dme-miR-219-5p |
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Accession | MIMAT0000335 |
Previous IDs | dme-miR-219 |
Sequence |
19 - ugauuguccaaacgcaauucu - 39 |
Deep sequencing | 5816 reads, 46 experiments |
Evidence | experimental; 454 [2-3], Illumina [3] |
Database links |
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Predicted targets |
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Mature sequence dme-miR-219-3p |
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Accession | MIMAT0020803 |
Sequence |
59 - aggguugcgacugggcaucgcg - 80 |
Deep sequencing | 114 reads, 33 experiments |
Evidence | not experimental |
Database links |
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References |
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1 |
PMID:12844358
"Computational identification of Drosophila microRNA genes"
Genome Biol. 4:R42(2003).
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2 |
PMID:17989254
"Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs"
Genome Res. 17:1850-1864(2007).
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3 |
PMID:17989255
"Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes"
Genome Res. 17:1865-1879(2007).
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