miRBase entry: cel-mir-272

Stem-loop cel-mir-272


Accession
MI0000352
Description
Caenorhabditis elegans cel-mir-272 precursor miRNA

Literature search
1 open access papers mention cel-mir-272
(2 sentences)

Sequence

cgcaggcacgugcagguauguaggcaggcguaggcccguaggcaaguguaggucugcaggcaugaaUGUAGGCAUGGGUGUUUGgaagaccugcg
((((((....(.(((((((.((.((..((((..(((.((((((........)))))).)))....))))..)).)).))))))).)...))))))

Structure
      cacg g       g  g  ag    --ag   c      aag 
cgcagg    u cagguau ua gc  gcgu    gcc guaggc   u
||||||    | ||||||| || ||  ||||    ||| ||||||    
gcgucc    a GUUUGUG GU CG  UGUa    cgg cgucug   g
      -aga g       G  A  GA    agua   a      gau 


Annotation confidence Not enough data
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Comments
This sequence was predicted by computational approaches and validated using a PCR amplification protocol.

Genome context
chrIII: 11637966-11638060 [-]

Database links

Mature cel-miR-272

Accession MIMAT0000328
Description Caenorhabditis elegans cel-miR-272 mature miRNA
Sequence 67 - UGUAGGCAUGGGUGUUUG - 84
Evidence experimental
PCR [1], Illumina [2]

References

  1. PubMed ID: 12769849
    Computational and experimental identification of C. elegans microRNAs
    "Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J"
    "Mol Cell (2003) 11:1253-1263

  2. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54