miRBase entry: cel-mir-251

Stem-loop cel-mir-251


Accession
MI0000327
Description
Caenorhabditis elegans cel-mir-251 precursor miRNA
Gene family
MIPF0000284; mir-251

Literature search
2 open access papers mention cel-mir-251
(47 sentences)

Sequence

1471 reads, 24 reads per million, 13 experiments
acuuucaaugaccccuugUUAAGUAGUGGUGCCGCUCUUAuuagguugaaaaguaauaagaguaguucacuacuuaucaaggugaaauuugaaauuu
..((((((....((((((.((((((((((.((.((((((((((..........)))))))))).)))))))))))).))))).)....))))))...

Structure
-ac      ugac -     U          U  C          gguu 
   uuucaa    c ccuug UAAGUAGUGG GC GCUCUUAuua    g
   ||||||    | ||||| |||||||||| || ||||||||||     
   aaaguu    g ggaac auucaucacu ug ugagaauaau    a
uuu      uaaa u     u          -  a          gaaa 


Annotation confidence Not enough data
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Genome context
chrX: 11004728-11004824 [+]

Database links

Mature cel-miR-251

Accession MIMAT0000307
Description Caenorhabditis elegans cel-miR-251 mature miRNA
Sequence 19 - UUAAGUAGUGGUGCCGCUCUUA - 40
Evidence experimental
Northern [1-2], PCR [1], Illumina [3], CLIPseq [4]
Database links
Predicted targets

References

  1. PubMed ID: 12672692
    The microRNAs of Caenorhabditis elegans
    "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
    "Genes Dev (2003) 17:991-1008

  2. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207

  3. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54

  4. PubMed ID: 20062054
    Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
    "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
    "Nat Struct Mol Biol (2010) 17:173-179