Stem-loop sequence hsa-mir-148a

Accession

MI0000253 (change log)

Previous IDs

hsa-mir-148

Symbol

HGNC:MIR148A

Description

Homo sapiens miR-148a stem-loop

Gene family

MIPF0000056; mir-148

Literature search

286 open access papers mention hsa-mir-148a
(1789 sentences)

Stem-loop

                 -  -a    cc    -   ag 
5' gaggcaaaguucug ag  cacu  gacu cug  u
   |||||||||||||| ||  ||||  |||| |||  a
3' cucuguuucaagac uc  guga  cuga gau  u
                 a  ac    --    a   ag 

Deep sequencing

7785735 reads, 1.51e+04 reads per million, 157 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr7: 25949919-25949986 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR148A
• HGNC:MIR148A
• RNAcentral:URS00004C7B32_9606
• miRBase Tracker:MI0000253

Mature sequence hsa-miR-148a-5p

• Accession: MIMAT0004549
• Previous IDs: hsa-miR-148a*
• Sequence: 6 - aaaguucugagacacuccgacu - 27
• Deep sequencing: 65221 reads, 141 experiments
• Evidence: experimental; cloned [3]
• Database links:
  • RNAcentral:URS00003E16E5_9606
• Predicted targets:
  • TargetMiner:hsa-miR-148a-5p
  • TargetScanVert:hsa-miR-148a-5p
  • miRDB:hsa-miR-148a-5p
  • microrna.org:hsa-miR-148a-5p

Mature sequence hsa-miR-148a-3p

• Accession: MIMAT0000243
• Previous IDs: hsa-miR-148a
• Sequence: 44 - ucagugcacuacagaacuuugu - 65
• Deep sequencing: 7720471 reads, 157 experiments
• Evidence: experimental; cloned [1-3], Northern [2]
• Database links:
  • RNAcentral:URS00003BBF48_9606
• Predicted targets:
  • TargetMiner:hsa-miR-148a-3p
  • TargetScanVert:hsa-miR-148a-3p
  • miRDB:hsa-miR-148a-3p
  • microrna.org:hsa-miR-148a-3p

References

1. PMID:12007417 "Identification of tissue-specific microRNAs from mouse" Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T Curr Biol. 12:735-739(2002).
2. PMID:15978578 "Identification of human fetal liver miRNAs by a novel method" Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X FEBS Lett. 579:3849-3854(2005).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).