Stem-loop sequence mmu-mir-202

Accession

MI0000245 (change log)

Symbol

MGI:Mir202

Description

Mus musculus miR-202 stem-loop

Gene family

MIPF0000121; mir-202

Literature search

19 open access papers mention mmu-mir-202
(76 sentences)

Stem-loop

        u           -a          ug       
5' guucc uuuuccuaugc  uauacuucuu  uggauc 
   ||||| |||||||||||  ||||||||||  ||||| u
3' cgagg agaaggguacg  auauggagaa  aucugg 
        u           cg          --       

Deep sequencing

196373 reads, 635 reads per million, 49 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr7: 139957689-139957760 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000078514 ; AC107822.6-001; exon 2

  ENSMUST00000130771 ; Gm2044-001; exon 2

  antisense

  OTTMUST00000078515 ; AC107822.5-001; intron 1

  OTTMUST00000078516 ; AC107822.5-002; intron 3

  ENSMUST00000139218 ; Gm16201-001; intron 1

  ENSMUST00000134312 ; Gm16201-002; intron 3

Clustered miRNAs

< 10kb from mmu-mir-202

• mmu-mir-202: chr7: 139957689-139957760 [-]
• mmu-mir-7686: chr7: 139957566-139957622 [-]

Database links

• EntrezGene:Mirn202
• MGI:Mir202
• RNAcentral:URS000075B2DB_10090
• miRBase Tracker:MI0000245

Mature sequence mmu-miR-202-5p

• Accession: MIMAT0004546
• Sequence: 9 - uuccuaugcauauacuucuuu - 29
• Deep sequencing: 186178 reads, 40 experiments
• Evidence: experimental; cloned [3], Illumina [4-5]
• Database links:
  • RNAcentral:URS00002DA4FF_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-202-5p
  • miRDB:mmu-miR-202-5p
  • microrna.org:mmu-miR-202-5p

Mature sequence mmu-miR-202-3p

• Accession: MIMAT0000235
• Previous IDs: mmu-miR-202
• Sequence: 45 - agagguauagcgcaugggaaga - 66
• Deep sequencing: 10176 reads, 38 experiments
• Evidence: experimental; cloned [1-3], Illumina [4-5]
• Database links:
  • RNAcentral:URS0000084643_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-202-3p
  • miRDB:mmu-miR-202-3p
  • microrna.org:mmu-miR-202-3p

References

1. PMID:12554859 "New microRNAs from mouse and human" Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T RNA. 9:175-179(2003).
2. PMID:16766679 "Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes" Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H Genes Dev. 20:1732-1743(2006).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
5. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).