Stem-loop sequence mmu-mir-187

Accession

MI0000229 (change log)

Symbol

MGI:Mir187

Description

Mus musculus miR-187 stem-loop

Gene family

MIPF0000078; mir-187

Literature search

22 open access papers mention mmu-mir-187
(123 sentences)

Stem-loop

   uca    a           c  -  c - ug 
5'    ggcu caacacaggac cg gg g c  c
      |||| ||||||||||| || || | |   
3'    ccga guuguguucug gc cc c g  u
   -gg    c           u  u  c a uc 

Deep sequencing

23357 reads, 136 reads per million, 106 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr18: 24429110-24429170 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mirn187
• MGI:Mir187
• RNAcentral:URS000075CC81_10090
• miRBase Tracker:MI0000229

Mature sequence mmu-miR-187-5p

• Accession: MIMAT0016997
• Previous IDs: mmu-miR-187*
• Sequence: 3 - aggcuacaacacaggacccggg - 24
• Deep sequencing: 3063 reads, 67 experiments
• Evidence: experimental; Illumina [4]
• Database links:
  • RNAcentral:URS0000211A24_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-187-5p
  • miRDB:mmu-miR-187-5p

Mature sequence mmu-miR-187-3p

• Accession: MIMAT0000216
• Previous IDs: mmu-miR-187
• Sequence: 40 - ucgugucuuguguugcagccgg - 61
• Deep sequencing: 20219 reads, 85 experiments
• Evidence: experimental; cloned [1-2], Illumina [3-4]
• Database links:
  • RNAcentral:URS00001EB9FC_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-187-3p
  • miRDB:mmu-miR-187-3p
  • microrna.org:mmu-miR-187-3p

References

1. PMID:12554859 "New microRNAs from mouse and human" Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T RNA. 9:175-179(2003).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).