miRBase entry: ath-MIR173

Stem-loop ath-MIR173


Accession
MI0000217
Description
Arabidopsis thaliana ath-MIR173 precursor miRNA
Gene family
MIPF0001175; MIR173

Literature search
15 open access papers mention ath-MIR173
(47 sentences)

Sequence

uaaguacuUUCGCUUGCAGAGAGAAAUCACaguggucaaaaaaguuguaguuuucuuaaagucucuuuccucugUGAUUCUCUGUGUAAGCGAAAgagcuug
(((((.((((((((((((.((((((.((((((.((.......(.((..((....))..)).)......)).)))))))))))).)))))))))))).)))))

Structure
     a            G      A      u  ucaaaaa g  gu  u 
uaagu cuUUCGCUUGCA AGAGAA UCACag gg       a uu  ag u
||||| |||||||||||| |||||| |||||| ||       | ||  ||  
guucg gAAAGCGAAUGU UCUCUU AGUguc cc       u aa  uc u
     a            G      -      u  -uuucuc g  au  u 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
MIR173 is thought to target mRNAs coding for a protein of unknown function (At3g28460) [1].

Genome context
chr3: 8236153-8236254 [+]

Database links

Mature ath-miR173-5p

Accession MIMAT0000206
Description Arabidopsis thaliana ath-miR173-5p mature miRNA
Sequence 9 - UUCGCUUGCAGAGAGAAAUCAC - 30
Evidence experimental
cloned [1-2], 454 [3-4], MPSS [3], Illumina [5]

Mature ath-miR173-3p

Accession MIMAT0022843
Description Arabidopsis thaliana ath-miR173-3p mature miRNA
Sequence 75 - UGAUUCUCUGUGUAAGCGAAA - 95
Evidence experimental
Illumina [6]

References

  1. PubMed ID: 16040653
    Expression of Arabidopsis MIRNA genes
    "Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC"
    "Plant Physiol (2005) 138:2145-2154

  2. PubMed ID: 16954541
    MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
    "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
    "Genome Res (2006) 16:1276-1288

  3. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  4. PubMed ID: 19815687
    Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
    "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
    "J Exp Bot (2010) 61:165-177

  5. PubMed ID: 12225663
    CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana
    "Park W, Li J, Song R, Messing J, Chen X"
    "Curr Biol (2002) 12:1484-1495

  6. PubMed ID: 22221297
    Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology
    "Zhang B, Xie D, Jin Z"
    "J Integr Plant Biol (2012) 54:73-86