Accession
MI0000214
Description
Arabidopsis thaliana
ath-MIR171a precursor miRNA
Gene family
MIPF0000030;
MIR171_1
Literature search
30 open access papers mention ath-MIR171a
(154 sentences)
(154 sentences)
Sequence
augagagagucccuuugaUAUUGGCCUGGUUCACUCAGAucuuaccugaccacacacguagauauacauuauucucucuagauuaucUGAUUGAGCCGCGCCAAUAUCucaguacucucucgu
((((((((((..((..(((((((((.(((((((.((((((..(..............(((....)))..............)..)))))).))))))).)))))))))..)).))))))))))
((((((((((..((..(((((((((.(((((((.((((((..(..............(((....)))..............)..)))))).))))))).)))))))))..)).))))))))))
Structure
cc uu C C cu accugaccacacac g
augagagagu cu gaUAUUGGC UGGUUCA UCAGAu u gua a
|||||||||| || ||||||||| ||||||| |||||| | |||
ugcucucuca ga CUAUAACCG GCCGAGU AGUcua a cau u
-u cu C U uu gaucucucuuauua a
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
MIR171 is thought, like miR170, to target mRNAs coding for GRAS domain or SCARECROW-like proteins, a family of transcription factors whose members have been implicated in radial patterning in roots, signaling by the phytohormone gibberellin, and light signaling [2].
Genome context
chr3: 19073434-19073556 [+]
Database links
Mature ath-miR171a-3p
| Accession | MIMAT0000202 |
| Description | Arabidopsis thaliana ath-miR171a-3p mature miRNA |
| Sequence | 88 - UGAUUGAGCCGCGCCAAUAUC - 108 |
| Evidence |
experimental
cloned [1,3], Northern [1], 5'RACE [3], 454 [4-5], MPSS [4], Illumina [6] |
Mature ath-miR171a-5p
| Accession | MIMAT0031888 |
| Description | Arabidopsis thaliana ath-miR171a-5p mature miRNA |
| Sequence | 19 - UAUUGGCCUGGUUCACUCAGA - 39 |
| Evidence | not_experimental |
References
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