Accession
MI0000208
Description
Arabidopsis thaliana
ath-MIR167a precursor miRNA
Gene family
MIPF0000023;
MIR167_1
Literature search
44 open access papers mention ath-MIR167a
(284 sentences)
(284 sentences)
Sequence
uggugcaccggcaucugaUGAAGCUGCCAGCAUGAUCUAauuagcuuucuuuauccuuuguuguguuucaugacgaugguuaagagaucagucucgauuaGAUCAUGUUCGCAGUUUCACCcguugacugucgcaccc
.(((((..(((((.(.(.(((((((((.((((((((((((((((((.(((((..((.((((((((...)))))))).))...)))))..)).)).)))))))))))))).))))))))).).).)).)))..))))).
.(((((..(((((.(.(.(((((((((.((((((((((((((((((.(((((..((.((((((((...)))))))).))...)))))..)).)).)))))))))))))).))))))))).).).)).)))..))))).
Structure
u ac - u u a C - - -u -au u u ggugc cgg ca c g UGAAGCUGC AGCAUGAUCUAauu ag cu ucuuu cc uuguugug ||||| ||| || | | ||||||||| |||||||||||||| || || ||||| || |||||||| u ccacg guc gu g C ACUUUGACG UUGUACUAGauuag uc ga agaga gg agcaguac c cu a u c C C c u cu auu u u
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
MIR167a is thought, like miR160, to target mRNAs coding for auxin response factors, DNA binding proteins that are thought to control transcription in response to the phytohormone auxin. Transcriptional regulation is important for many of the diverse developmental responses to auxin signals, which include cell elongation, division, and differentiation in both roots and shoots [2].
Genome context
chr3: 8108072-8108209 [+]
Database links
Mature ath-miR167a-5p
| Accession | MIMAT0000196 |
| Description | Arabidopsis thaliana ath-miR167a-5p mature miRNA |
| Sequence | 19 - UGAAGCUGCCAGCAUGAUCUA - 39 |
| Evidence |
experimental
cloned [1,3], Northern [1], 5'RACE [3], 454 [4-5], MPSS [4], Illumina [6] |
Mature ath-miR167a-3p
| Accession | MIMAT0031883 |
| Description | Arabidopsis thaliana ath-miR167a-3p mature miRNA |
| Sequence | 101 - GAUCAUGUUCGCAGUUUCACC - 121 |
| Evidence | not_experimental |
References
|
