Accession
MI0000198
Description
Arabidopsis thaliana
ath-MIR164b precursor miRNA
Gene family
MIPF0000045;
MIR164
Literature search
43 open access papers mention ath-MIR164b
(265 sentences)
(265 sentences)
Sequence
gaUGGAGAAGCAGGGCACGUGCAuuacuagcucauauauacacucucaccacaaaugcguguauauaugcggaauuuugugauauagauguguguguguguugagugugaugauauggaugaguuaguucuuCAUGUGCCCAUCUUCACCAUC
(((((.((((..(((((((((....((((((((((.(((((((.(((((((((.((((((.(((((..((((....)))).))))).)))))).)))).).)))).)))....)))).))))))))))....)))))))))..)))).)))))
(((((.((((..(((((((((....((((((((((.(((((((.(((((((((.((((((.(((((..((((....)))).))))).)))))).)))).).)))).)))....)))).))))))))))....)))))))))..)))).)))))
Structure
A CA CAuu a ---- u - - a g au a
gaUGG GAAG GGGCACGUG acuagcucau uaua cac cuca c caca augcgu uauau gcgg a
||||| |||| ||||||||| |||||||||| |||| ||| |||| | |||| |||||| ||||| ||||
CUACC CUUC CCCGUGUAC ugauugagua guau gug gagu g gugu ugugua auaua uguu u
A UA uucu g agua u u u g g -g u
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
MIR164b is thought to target mRNAs coding for NAC domain containing proteins such as Cup-Shaped Cotyledon 2 (CUC2) which is required for shoot apical meristem formation [2].
Genome context
chr5: 287584-287736 [+]
Database links
Mature ath-miR164b-5p
| Accession | MIMAT0000186 |
| Description | Arabidopsis thaliana ath-miR164b-5p mature miRNA |
| Sequence | 3 - UGGAGAAGCAGGGCACGUGCA - 23 |
| Evidence |
experimental
cloned [1,3], Northern [1], 5'RACE [3], 454 [4-5], MPSS [4], Illumina [6] |
Mature ath-miR164b-3p
| Accession | MIMAT0031878 |
| Description | Arabidopsis thaliana ath-miR164b-3p mature miRNA |
| Sequence | 133 - CAUGUGCCCAUCUUCACCAUC - 153 |
| Evidence | not_experimental |
References
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