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miRBase |
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Stem-loop sequence ath-MIR160c |
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Accession | MI0000192 (change log) | ||||
Description | Arabidopsis thaliana miR160c stem-loop | ||||
Gene family | MIPF0000032; MIR160 | ||||
Literature search |
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36 open access papers mention ath-MIR160c | ||||
Stem-loop |
c c ga ug aua g 5' guuaugc uggcucc uguaugccac g g ccgauuuug u ||||||| ||||||| |||||||||| | | ||||||||| 3' caguacg acugagg acaugcggug c c ggcuaaaau u a a gc gu --- u |
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Confidence |
Annotation confidence: not enough data
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Comments |
MIR160c is thought to target mRNAs coding for auxin response factor proteins [2]. |
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Genome context |
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Database links |
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Mature sequence ath-miR160c-3p |
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Accession | MIMAT0031875 |
Sequence |
68 - cguacaaggagucaagcauga - 88 |
Evidence | experimental; Illumina [7] |
References |
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1 |
PMID:12101121
"MicroRNAs in plants"
Genes Dev. 16:1616-1626(2002).
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2 |
PMID:12202040
"Prediction of plant microRNA targets"
Cell. 110:513-520(2002).
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3 |
PMID:16040653
"Expression of Arabidopsis MIRNA genes"
Plant Physiol. 138:2145-2154(2005).
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4 |
PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
Genome Res. 16:1276-1288(2006).
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5 |
PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
Genes Dev. 20:3407-3425(2006).
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6 |
PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
J Exp Bot. 61:165-177(2010).
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7 |
PMID:24119003
"Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots"
BMC Genomics. 14:701(2013).
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