Stem-loop sequence mmu-mir-153

Accession

MI0000175 (change log)

Symbol

MGI:Mir153

Description

Mus musculus miR-153 stem-loop

Gene family

MIPF0000050; mir-153

Literature search

32 open access papers mention mmu-mir-153
(714 sentences)

Stem-loop

        -             gu       -a  aa 
5' cggug ucauuuuugugac  ugcagcu  gu  u
   ||||| |||||||||||||  |||||||  ||  a
3' guuac agugaaaacacug  acguuga  cg  u
        u             au       cc  ag 

Deep sequencing

77131 reads, 821 reads per million, 48 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr12: 117250817-117250885 [+]
• Overlapping transcripts:

  sense

  ENSMUST00000070733 ; Ptprn2-201; intron 19

Database links

• EntrezGene:Mir153
• MGI:Mir153
• RNAcentral:URS000075AA38_10090
• miRBase Tracker:MI0000175

Mature sequence mmu-miR-153-5p

• Accession: MIMAT0016992
• Previous IDs: mmu-miR-153*
• Sequence: 5 - gucauuuuugugacguugcagcu - 27
• Deep sequencing: 777 reads, 28 experiments
• Evidence: experimental; Illumina [5]
• Database links:
  • RNAcentral:URS00003772D1_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-153-5p
  • miRDB:mmu-miR-153-5p

Mature sequence mmu-miR-153-3p

• Accession: MIMAT0000163
• Previous IDs: mmu-miR-153
• Sequence: 44 - uugcauagucacaaaagugauc - 65
• Deep sequencing: 76353 reads, 47 experiments
• Evidence: experimental; cloned [1-3], Illumina [4-5]
• Database links:
  • RNAcentral:URS0000068B85_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-153-3p
  • miRDB:mmu-miR-153-3p
  • microrna.org:mmu-miR-153-3p

References

1. PMID:12007417 "Identification of tissue-specific microRNAs from mouse" Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T Curr Biol. 12:735-739(2002).
2. PMID:15538371 "A pancreatic islet-specific microRNA regulates insulin secretion" Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M Nature. 432:226-230(2004).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
5. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).