miRBase entry: mmu-mir-135a-1

Stem-loop mmu-mir-135a-1


Accession
MI0000161
Symbol
MGI: Mir135a-1
Description
Mus musculus mmu-mir-135a-1 precursor miRNA
Gene family
MIPF0000028; mir-135

Literature search
73 open access papers mention mmu-mir-135a-1
(508 sentences)

Sequence

99133 reads, 1799 reads per million, 81 experiments
aggccucacuguucucUAUGGCUUUUUAUUCCUAUGUGAuucuauugcucgcucaUAUAGGGAUUGGAGCCGUGGCGuacggugaggaua
...(((((((((.(.((((((((((..((((((((((((.............)))))))))))).)))))))))).).)))))))))...

Structure
agg         u u          UU            uucua 
   ccucacugu c cUAUGGCUUU  AUUCCUAUGUGA     u
   ||||||||| | ||||||||||  ||||||||||||     u
   ggaguggca G GGUGCCGAGG  UAGGGAUAUacu     g
aua         u C          -U            cgcuc 


Annotation confidence High
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Genome context
chr9: 106154124-106154213 [+]

Database links

Mature mmu-miR-135a-5p

Accession MIMAT0000147
Description Mus musculus mmu-miR-135a-5p mature miRNA
Sequence 17 - UAUGGCUUUUUAUUCCUAUGUGA - 39
Evidence experimental
cloned [1,3], Illumina [4-5]
Database links
Predicted targets

Mature mmu-miR-135a-1-3p

Accession MIMAT0004531
Description Mus musculus mmu-miR-135a-1-3p mature miRNA
Sequence 56 - UAUAGGGAUUGGAGCCGUGGCG - 77
Evidence experimental
cloned [3], Illumina [4-5]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 12007417
    Identification of tissue-specific microRNAs from mouse
    "Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T"
    "Curr Biol (2002) 12:735-739

  3. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  4. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  5. PubMed ID: 15634332
    New human and mouse microRNA genes found by homology search
    "Weber MJ"
    "FEBS J (2005) 272:59-73