Stem-loop mmu-mir-29b-1

Accession

MI0000143

Symbol

MGI: Mir29b-1

Description

Mus musculus mmu-mir-29b-1 precursor miRNA

Gene family

MIPF0000009; mir-29

Literature search

339 open access papers mention mmu-mir-29b-1
(3465 sentences)

Sequence

207860 reads, 2124 reads per million, 106 experiments

aggaaGCUGGUUUCAUAUGGUGGUUUAgauuuaaauagugauugucUAGCACCAUUUGAAAUCAGUGUUcu
((((.((((((((((.((((((..((((((.............)))))))))))).)))))))))).))))

Structure

    a          U      GU      uuaaa 
agga GCUGGUUUCA AUGGUG  UUAgau     u
|||| |||||||||| ||||||  ||||||     a
ucUU UGACUAAAGU UACCAC  GAUcug     g
    G          U      --      uuagu 

Annotation confidence High

Genome context

chr6: 31063023-31063093 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mmu-mir-29b-1

Mature mmu-miR-29b-1-5p

• Accession: MIMAT0004523
• Description: Mus musculus mmu-miR-29b-1-5p mature miRNA
• Sequence: 6 - GCUGGUUUCAUAUGGUGGUUUA - 27
• Evidence: experimental ; cloned [5], Illumina [6-7]

Mature mmu-miR-29b-3p

• Accession: MIMAT0000127
• Description: Mus musculus mmu-miR-29b-3p mature miRNA
• Sequence: 47 - UAGCACCAUUUGAAAUCAGUGUU - 69
• Evidence: experimental ; cloned [1,3,5], Illumina [6,8]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 12919684
   Embryonic stem cell-specific MicroRNAs
   "Houbaviy HB, Murray MF, Sharp PA"
   "Dev Cell (2003) 5:351-358


3. PubMed ID: 12007417
   Identification of tissue-specific microRNAs from mouse
   "Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T"
   "Curr Biol (2002) 12:735-739


4. PubMed ID: 15538371
   A pancreatic islet-specific microRNA regulates insulin secretion
   "Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M"
   "Nature (2004) 432:226-230


5. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


6. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


7. PubMed ID: 15634332
   New human and mouse microRNA genes found by homology search
   "Weber MJ"
   "FEBS J (2005) 272:59-73