miRBase entry: dme-mir-13b-1

Stem-loop dme-mir-13b-1


Accession
MI0000134
Description
Drosophila melanogaster dme-mir-13b-1 precursor miRNA
Gene family
MIPF0000049; mir-2

Literature search
13 open access papers mention dme-mir-13b-1
(41 sentences)

Sequence

313907 reads, 7335 reads per million, 49 experiments
ccaugUCGUUAAAAUGUUUGUGAACUUAUGuauucacaaucaUAUCACAGCCAUUUUGACGAGUuugg
(((..(((((((((((.((((((...((((..........)))))))))).)))))))))))...)))

Structure
   -ug           U      ACU    uauu 
cca   UCGUUAAAAUG UUGUGA   UAUG    c
|||   ||||||||||| ||||||   ||||     
ggu   AGCAGUUUUAC GACACU   AUac    a
   uUG           C      ---    uaac 


Annotation confidence High
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Genome context
chr3R: 15417408-15417475 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from dme-mir-13b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dme-miR-13b-3p

Accession MIMAT0000119
Description Drosophila melanogaster dme-miR-13b-3p mature miRNA
Sequence 43 - UAUCACAGCCAUUUUGACGAGU - 64
Evidence experimental
Northern [1-2], cloned [3], 454 [4-5], Illumina [5]
Database links
Predicted targets

Mature dme-miR-13b-1-5p

Accession MIMAT0020796
Description Drosophila melanogaster dme-miR-13b-1-5p mature miRNA
Sequence 6 - UCGUUAAAAUGUUUGUGAACUUAUG - 30
Evidence not_experimental
Database links

References

  1. PubMed ID: 11679670
    Identification of novel genes coding for small expressed RNAs
    "Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T"
    "Science (2001) 294:853-858

  2. PubMed ID: 12812784
    Temporal regulation of microRNA expression in Drosophila melanogaster mediated by hormonal signals and broad-Complex gene activity
    "Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V"
    "Dev Biol (2003) 259:9-18

  3. PubMed ID: 12919683
    The small RNA profile during Drosophila melanogaster development
    "Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T"
    "Dev Cell (2003) 5:337-350

  4. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864

  5. PubMed ID: 17989255
    Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
    "Genome Res (2007) 17:1865-1879