miRBase entry: dme-mir-11

Stem-loop dme-mir-11


Accession
MI0000131
Description
Drosophila melanogaster dme-mir-11 precursor miRNA
Gene family
MIPF0000252; mir-11

Literature search
9 open access papers mention dme-mir-11
(54 sentences)

Sequence

1584500 reads, 14078 reads per million, 49 experiments
gcacuuguCAAGAACUUUCUCUGUGACCCGcguguacuuaaaagccgCAUCACAGUCUGAGUUCUUGCugagugc
(((((((.(((((((((...((((((...(((.((........))))).))))))...))))))))).)))))))

Structure
       u         UCU      CCC   u  acu 
gcacuug CAAGAACUU   CUGUGA   Gcg gu   u
||||||| |||||||||   ||||||   ||| ||    
cgugagu GUUCUUGAG   GACACU   Cgc cg   a
       C         UCU      --A   -  aaa 


Annotation confidence High
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Genome context
chr3R: 21622497-21622571 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dme-mir-11
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dme-miR-11-3p

Accession MIMAT0000116
Description Drosophila melanogaster dme-miR-11-3p mature miRNA
Sequence 48 - CAUCACAGUCUGAGUUCUUGC - 68
Evidence experimental
cloned [1,3], Northern [1-2], 454 [4-5], Illumina [5]
Database links
Predicted targets

Mature dme-miR-11-5p

Accession MIMAT0020793
Description Drosophila melanogaster dme-miR-11-5p mature miRNA
Sequence 9 - CAAGAACUUUCUCUGUGACCCG - 30
Evidence not_experimental
Database links

References

  1. PubMed ID: 11679670
    Identification of novel genes coding for small expressed RNAs
    "Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T"
    "Science (2001) 294:853-858

  2. PubMed ID: 12812784
    Temporal regulation of microRNA expression in Drosophila melanogaster mediated by hormonal signals and broad-Complex gene activity
    "Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V"
    "Dev Biol (2003) 259:9-18

  3. PubMed ID: 12919683
    The small RNA profile during Drosophila melanogaster development
    "Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T"
    "Dev Cell (2003) 5:337-350

  4. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864

  5. PubMed ID: 17989255
    Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
    "Genome Res (2007) 17:1865-1879