Stem-loop sequence dme-mir-5

AccessionMI0000123 (change log)
DescriptionDrosophila melanogaster miR-5 stem-loop
Gene family MIPF0000309; mir-5
Literature search

10 open access papers mention dme-mir-5
(34 sentences)

   ---gcua       c               aguug 
5'        aaaggaa gaucguugugauaug     u
          ||||||| |||||||||||||||     u
3'        uuuccuu uuagugacacuauac     u
   cgcaaua       -               aaucc 
Get sequence
Deep sequencing
74886 reads, 2.88e+03 reads per million, 49 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Release_6; GCA_000001215.4) Overlapping transcripts
chr2R: 19661158-19661226 [-]
Clustered miRNAs
< 10kb from dme-mir-5
dme-mir-309chr2R: 19661706-19661774 [-]
dme-mir-3chr2R: 19661595-19661663 [-]
dme-mir-286chr2R: 19661422-19661521 [-]
dme-mir-4chr2R: 19661289-19661369 [-]
dme-mir-5chr2R: 19661158-19661226 [-]
dme-mir-6-1chr2R: 19661003-19661084 [-]
dme-mir-6-2chr2R: 19660869-19660942 [-]
dme-mir-6-3chr2R: 19660716-19660795 [-]
Database links

Mature sequence dme-miR-5-5p

Accession MIMAT0000110
Previous IDsdme-miR-5

5 - 


 - 27

Get sequence
Deep sequencing57335 reads, 46 experiments
Evidence experimental; cloned [1,3], Northern [1-2], 454 [4-5], Illumina [5]
Database links
Predicted targets

Mature sequence dme-miR-5-3p

Accession MIMAT0020786

43 - 


 - 65

Get sequence
Deep sequencing17534 reads, 44 experiments
Evidence not experimental
Database links


PMID:11679670 "Identification of novel genes coding for small expressed RNAs" Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T Science. 294:853-858(2001).
PMID:12919683 "The small RNA profile during Drosophila melanogaster development" Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T Dev Cell. 5:337-350(2003).
PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).