miRBase entry: cel-mir-78

Stem-loop cel-mir-78


Accession
MI0000049
Description
Caenorhabditis elegans cel-mir-78 precursor miRNA


Sequence

10003 reads, 96 reads per million, 14 experiments
aauaaaauauauuguuucauaguguccguaaaauaacuagauuuauuuuguaaaaacuauUGGAGGCCUGGUUGUUUGUGCuggaauguuucgaga
...........(((...(((....((((((((((((((((.(((.....((....)).....)))..)))))))))).))).))))))...)))..

Structure
aauaaaauaua   uuu   agug   -   -          -a   auuuu  a 
           uug   cau    ucc gua aaauaacuag  uuu     gu a
           |||   |||    ||| ||| ||||||||||  |||     ||  
           agc   gua    agg CGU UUUGUUGGUC  GAG     ca a
---------ag   uuu   ----   u   G          CG   GUuau  a 


Annotation confidence Not enough data
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Genome context
chrIV: 15165647-15165742 [+]

Database links

Mature cel-miR-78

Accession MIMAT0000050
Description Caenorhabditis elegans cel-miR-78 mature miRNA
Sequence 61 - UGGAGGCCUGGUUGUUUGUGC - 81
Evidence experimental
cloned [1-2], 454 [3], Illumina [4]
Database links
Predicted targets

References

  1. PubMed ID: 11679671
    An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    "Lau NC, Lim LP, Weinstein EG, Bartel DP"
    "Science (2001) 294:858-862

  2. PubMed ID: 12672692
    The microRNAs of Caenorhabditis elegans
    "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
    "Genes Dev (2003) 17:991-1008

  3. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207

  4. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54