miRBase entry: cel-mir-66

Stem-loop cel-mir-66


Accession
MI0000037
Description
Caenorhabditis elegans cel-mir-66 precursor miRNA

Literature search
3 open access papers mention cel-mir-66
(6 sentences)

Sequence

781733 reads, 8154 reads per million, 16 experiments
ccacaaaaaugccauaCAUGACACUGAUUAGGGAUGUGAugaauguuaagaucccgaucAAAUUCCUAACGGUGUCAAACauggcguaugugguuguag
(((((...(((((((...((((((((.((((((((.((((................)))).))))))))))))))))...))))))).)))))......

Structure
------     aaa       aCA        A        G    gaauguu 
      ccaca   augccau   UGACACUG UUAGGGAU UGAu       a
      |||||   |||||||   |||||||| |||||||| ||||        
      ggugu   ugcggua   ACUGUGGC AAUCCUUA Acua       a
gauguu     --a       CAA        -        A    gcccuag 


Annotation confidence High
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Genome context
chrIII: 2173108-2173206 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from cel-mir-66
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-66-5p

Accession MIMAT0000038
Description Caenorhabditis elegans cel-miR-66-5p mature miRNA
Sequence 17 - CAUGACACUGAUUAGGGAUGUGA - 39
Evidence experimental
cloned [1-2], Northern [1], 454 [3], Illumina [4-5]
Database links
Predicted targets

Mature cel-miR-66-3p

Accession MIMAT0020315
Description Caenorhabditis elegans cel-miR-66-3p mature miRNA
Sequence 60 - AAAUUCCUAACGGUGUCAAAC - 80
Evidence experimental
Illumina [5]
Database links

References

  1. PubMed ID: 11679671
    An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    "Lau NC, Lim LP, Weinstein EG, Bartel DP"
    "Science (2001) 294:858-862

  2. PubMed ID: 12672692
    The microRNAs of Caenorhabditis elegans
    "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
    "Genes Dev (2003) 17:991-1008

  3. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207

  4. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54

  5. PubMed ID: 21307183
    Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
    "Warf MB, Johnson WE, Bass BL"
    "RNA (2011) 17:563-577