Accession
MI0000035
Description
Caenorhabditis elegans
cel-mir-64 precursor miRNA
Gene family
MIPF0000295;
mir-64
Literature search
2 open access papers mention cel-mir-64
(10 sentences)
(10 sentences)
Sequence
1018364
reads,
6350
reads per million, 16 experiments
cuccccgcugaccucgccgaaUAUGACACUGAAGCGUUACCGAAccguuuucccacaccuggauucgGUGCAACGAUCAGUGGCAUGCucggcuagcgccaguuaaguau
......((((.(((.(((((.((((.((((((..(((((((((((((............))).)))))))..))).)))))).)))).))))).)).).)))).......
......((((.(((.(((((.((((.((((((..(((((((((((((............))).)))))))..))).)))))).)))).))))).)).).)))).......
Structure
-cucccc a - c a A AG -- - uuuuc
gcug c cu gccga UAUG CACUGA CGU UACCGAA ccg c
|||| | || ||||| |||| |||||| ||| ||||||| |||
ugac g ga cggcu GUAC GUGACU GCA GUGgcuu ggu c
uaugaau c c u C G -A AC a ccaca
Annotation confidence
High
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Genome context
chrIII: 2172848-2172957 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from cel-mir-64
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cel-miR-64-5p
| Accession | MIMAT0000036 |
| Description | Caenorhabditis elegans cel-miR-64-5p mature miRNA |
| Sequence | 22 - UAUGACACUGAAGCGUUACCGAA - 44 |
| Evidence |
experimental
cloned [1-2], Northern [1], 454 [3], Illumina [4], CLIPseq [5] |
| Database links |
|
| Predicted targets |
|
Mature cel-miR-64-3p
| Accession | MIMAT0015105 |
| Description | Caenorhabditis elegans cel-miR-64-3p mature miRNA |
| Sequence | 68 - GUGCAACGAUCAGUGGCAUGC - 88 |
| Evidence |
experimental
CLIPseq [5] |
| Database links |
|
References
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