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miRBase |
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Stem-loop sequence cel-mir-57 |
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Accession | MI0000028 (change log) | ||||
Description | Caenorhabditis elegans miR-57 stem-loop | ||||
Gene family | MIPF0000271; mir-57 | ||||
Literature search |
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6 open access papers mention cel-mir-57 | ||||
Stem-loop |
----------a aca c c c a g g u a 5' ucg ug ucgu uacc uguag uc agcu ugugu uga a ||| || |||| |||| ||||| || |||| ||||| ||| c 3' agc ac agca gugg acauc ag ucga gcaca acu a aaguauuuaga caa a c a - a - u a |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Database links |
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Mature sequence cel-miR-57-5p |
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Accession | MIMAT0000029 |
Previous IDs | cel-miR-57 |
Sequence |
16 - uacccuguagaucgagcugugugu - 39 |
Deep sequencing | 281690 reads, 17 experiments |
Evidence | experimental; cloned [1-2], 454 [3], Illumina [4,6], CLIPseq [5] |
Database links |
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Predicted targets |
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Mature sequence cel-miR-57-3p |
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Accession | MIMAT0020314 |
Previous IDs | cel-miR-57* |
Sequence |
55 - acgagcuagacuacaaggugca - 76 |
Deep sequencing | 1212 reads, 16 experiments |
Evidence | experimental; Illumina [6] |
Database links |
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References |
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1 |
PMID:11679671
"An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans"
Science. 294:858-862(2001).
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2 |
PMID:12672692
"The microRNAs of Caenorhabditis elegans"
Genes Dev. 17:991-1008(2003).
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3 |
PMID:17174894
"Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans"
Cell. 127:1193-1207(2006).
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4 | |
5 |
PMID:20062054
"Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans"
Nat Struct Mol Biol. 17:173-179(2010).
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6 |