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miRBase |
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Stem-loop sequence cel-mir-49 |
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Accession | MI0000020 (change log) | ||||
Description | Caenorhabditis elegans miR-49 stem-loop | ||||
Gene family | MIPF0000237; mir-49 | ||||
Literature search |
3 open access papers mention cel-mir-49 | ||||
Stem-loop |
uuuugaaaaa a c g au c ag aau 5' gacc ccguc gcaguuu uugug gugcu ca c c |||| ||||| ||||||| ||||| ||||| || | 3' uugg gguag cgucgaa agcac cacga gu g a ---uuuaguc a a g -- a cu agu |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Database links |
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Mature sequence cel-miR-49-5p |
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Accession | MIMAT0020309 |
Previous IDs | cel-miR-49* |
Sequence |
21 - cgcaguuuguugugaugugcucc - 43 |
Deep sequencing | 3089 reads, 15 experiments |
Evidence | experimental; Illumina [6] |
Database links |
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Mature sequence cel-miR-49-3p |
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Accession | MIMAT0000020 |
Previous IDs | cel-miR-49 |
Sequence |
61 - aagcaccacgagaagcugcaga - 82 |
Deep sequencing | 48078 reads, 17 experiments |
Evidence | experimental; cloned [1-2], 454 [3], Illumina [4,6], CLIPseq [5] |
Database links |
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Predicted targets |
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References |
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1 |
PMID:11679671
"An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans"
Science. 294:858-862(2001).
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2 |
PMID:12672692
"The microRNAs of Caenorhabditis elegans"
Genes Dev. 17:991-1008(2003).
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3 |
PMID:17174894
"Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans"
Cell. 127:1193-1207(2006).
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4 | |
5 |
PMID:20062054
"Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans"
Nat Struct Mol Biol. 17:173-179(2010).
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6 |