1 |
[+]
score:
14
Other miRNAs from this paper: ssc-mir-205, ssc-let-7f-1, bta-mir-26a-2, bta-let-7f-2, bta-mir-181a-2, bta-mir-205, bta-mir-27b, bta-mir-92a-2, bta-mir-10b, bta-mir-30a, bta-let-7f-1, bta-mir-137, bta-mir-143, bta-mir-146b, bta-mir-146a, bta-mir-182, bta-mir-202, bta-mir-211, bta-mir-26a-1, bta-mir-92a-1, bta-mir-1307, bta-mir-181a-1, ssc-mir-146b, ssc-mir-181a-1, ssc-mir-30a, ssc-mir-143, ssc-mir-10b, ssc-mir-181a-2, ssc-mir-27b, ssc-mir-92a-2, ssc-mir-92a-1, ssc-mir-1307, ssc-mir-202, ssc-mir-146a, ssc-let-7f-2, ssc-mir-137, ssc-mir-182, chi-let-7f, chi-mir-10b, chi-mir-1307, chi-mir-137, chi-mir-143, chi-mir-146b, chi-mir-182, chi-mir-202, chi-mir-211, chi-mir-27b, chi-mir-30a, chi-mir-92a
MiRNA name Target gene in MAPK signaling pathway MiR-10b BDNF MiR-211 SOS1 MiR-143 CACNA1E, FGF1, MAPK7, MAP3K7, PDGFRA, KRAS MiR-30a RAP1B, RASA1, RAPGEF2, TAOK1, CACNB2, CASP3, CACNA1C, IL1A, MAP2K4, MAP3K1, MAP3K12, MAP3K2, MAP3K5, NF1, PPP3CA, PPP3CB, RPS6KA2, CRKL MiR-146a TRAF6 To gain an insight into the molecular functions of genes in biological processes, we annotated the genes targeted by differentially expressed miRNAs using GO categories (Table S5).
[score:7]
MiRNA name Target gene in MAPK signaling pathway MiR-10b BDNF MiR-211 SOS1 MiR-143 CACNA1E, FGF1, MAPK7, MAP3K7, PDGFRA, KRAS MiR-30a RAP1B, RASA1, RAPGEF2, TAOK1, CACNB2, CASP3, CACNA1C, IL1A, MAP2K4, MAP3K1, MAP3K12, MAP3K2, MAP3K5, NF1, PPP3CA, PPP3CB, RPS6KA2, CRKL MiR-146a TRAF6 To gain an insight into the molecular functions of genes in biological processes, we annotated the genes targeted by differentially expressed miRNAs using GO categories (Table S5).
[score:7]
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2 |
[+]
score:
14
Other miRNAs from this paper: bta-mir-26a-2, bta-mir-21, bta-mir-222, bta-mir-27a, bta-mir-30d, bta-mir-99a, bta-mir-31, bta-mir-193a, bta-mir-17, bta-mir-23a, bta-mir-29b-2, bta-mir-122, bta-mir-23b, bta-mir-99b, bta-mir-146a, bta-mir-196a-2, bta-mir-196a-1, bta-mir-26a-1, bta-mir-375, bta-mir-29b-1, bta-mir-1281, bta-mir-2411, bta-mir-2478, bta-mir-2904-1, bta-mir-2904-2, bta-mir-2904-3, bta-mir-1246, bta-mir-3613a, bta-mir-574, chi-mir-122, chi-mir-17, chi-mir-193a, chi-mir-196a, chi-mir-21, chi-mir-222, chi-mir-23a, chi-mir-23b, chi-mir-2411, chi-mir-26a, chi-mir-27a, chi-mir-29b, chi-mir-30d, chi-mir-99a, chi-mir-99b
Another study elucidated that bta-miR-146a significantly inhibited the expression levels of TRAF6 and NF-kappa B, and suppressed bovine inflammation and innate immune responses through down-regulation of the TLR4/TRAF6/NF-kappa B pathway (Wang X. P. et al., 2017).
[score:10]
Bovine miR-146a regulates inflammatory cytokines of bovine mammary epithelial cells via targeting the TRAF6 gene.
[score:4]
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3 |
[+]
score:
6
Other miRNAs from this paper: chi-mir-135a, chi-mir-184, chi-mir-190a, chi-mir-190b, chi-mir-214, chi-mir-29a, chi-mir-29b, chi-mir-29c, chi-mir-33a, chi-mir-378, chi-mir-423, chi-mir-451, chi-mir-7
The regulation of the DNA damage response, stem cell differentiation, and development are likely the regulatory functions of cluster D. In addition, miR-146a and miR-184 (cluster E) most likely participate in the regulation of phosphatase activity and the regulation of the insulin receptor signaling pathway.
[score:6]
[1 to 20 of 1 sentences]
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4 |
[+]
score:
5
Other miRNAs from this paper: hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3, hsa-let-7f-1, hsa-let-7f-2, hsa-mir-15a, hsa-mir-16-1, hsa-mir-21, hsa-mir-23a, hsa-mir-24-1, hsa-mir-24-2, hsa-mir-26a-1, hsa-mir-29a, hsa-mir-30a, hsa-mir-31, hsa-mir-99a, hsa-mir-29b-1, hsa-mir-29b-2, hsa-mir-103a-2, hsa-mir-103a-1, hsa-mir-16-2, hsa-mir-192, hsa-mir-148a, hsa-mir-10b, hsa-mir-181a-2, hsa-mir-181a-1, hsa-mir-215, hsa-mir-223, hsa-mir-224, hsa-mir-200b, hsa-mir-15b, hsa-mir-27b, hsa-mir-125b-1, hsa-mir-141, hsa-mir-143, hsa-mir-152, hsa-mir-125b-2, hsa-mir-126, hsa-mir-146a, hsa-mir-184, hsa-mir-200c, hsa-mir-155, hsa-mir-29c, hsa-mir-200a, hsa-mir-99b, hsa-mir-296, hsa-mir-30e, hsa-mir-26a-2, hsa-mir-378a, hsa-mir-342, hsa-mir-148b, hsa-mir-451a, ssc-mir-125b-2, ssc-mir-148a, ssc-mir-15b, ssc-mir-184, ssc-mir-224, ssc-mir-23a, ssc-mir-24-1, ssc-mir-26a, ssc-mir-29b-1, ssc-let-7f-1, ssc-mir-103-1, ssc-mir-21, ssc-mir-29c, hsa-mir-486-1, hsa-mir-499a, hsa-mir-671, hsa-mir-378d-2, bta-mir-26a-2, bta-mir-29a, bta-let-7f-2, bta-mir-103-1, bta-mir-148a, bta-mir-16b, bta-mir-21, bta-mir-499, bta-mir-99a, bta-mir-125b-1, bta-mir-126, bta-mir-181a-2, bta-mir-27b, bta-mir-31, bta-mir-15b, bta-mir-215, bta-mir-30e, bta-mir-148b, bta-mir-192, bta-mir-200a, bta-mir-200c, bta-mir-23a, bta-mir-29b-2, bta-mir-29c, bta-mir-10b, bta-mir-24-2, bta-mir-30a, bta-mir-200b, bta-let-7a-1, bta-mir-342, bta-let-7f-1, bta-let-7a-2, bta-let-7a-3, bta-mir-103-2, bta-mir-125b-2, bta-mir-15a, bta-mir-99b, hsa-mir-664a, ssc-mir-99b, hsa-mir-103b-1, hsa-mir-103b-2, ssc-mir-15a, ssc-mir-16-2, ssc-mir-16-1, bta-mir-141, bta-mir-143, bta-mir-146a, bta-mir-152, bta-mir-155, bta-mir-16a, bta-mir-184, bta-mir-24-1, bta-mir-223, bta-mir-224, bta-mir-26a-1, bta-mir-296, bta-mir-29d, bta-mir-378-1, bta-mir-451, bta-mir-486, bta-mir-671, bta-mir-29e, bta-mir-29b-1, bta-mir-181a-1, ssc-mir-181a-1, ssc-mir-215, ssc-mir-30a, bta-mir-2318, bta-mir-2339, bta-mir-2430, bta-mir-664a, bta-mir-378-2, ssc-let-7a-1, ssc-mir-378-1, ssc-mir-29a, ssc-mir-30e, ssc-mir-499, ssc-mir-143, ssc-mir-10b, ssc-mir-486-1, ssc-mir-152, ssc-mir-103-2, ssc-mir-181a-2, ssc-mir-27b, ssc-mir-24-2, ssc-mir-99a, ssc-mir-148b, ssc-mir-664, ssc-mir-192, ssc-mir-342, ssc-mir-125b-1, oar-mir-21, oar-mir-29a, oar-mir-125b, oar-mir-181a-1, hsa-mir-378b, hsa-mir-378c, ssc-mir-296, ssc-mir-155, ssc-mir-146a, bta-mir-148c, ssc-mir-126, ssc-mir-378-2, ssc-mir-451, hsa-mir-378d-1, hsa-mir-378e, hsa-mir-378f, hsa-mir-378g, hsa-mir-378h, hsa-mir-378i, hsa-mir-451b, hsa-mir-499b, ssc-let-7a-2, ssc-mir-486-2, hsa-mir-664b, hsa-mir-378j, ssc-let-7f-2, ssc-mir-29b-2, ssc-mir-31, ssc-mir-671, bta-mir-378b, bta-mir-378c, hsa-mir-486-2, oar-let-7a, oar-let-7f, oar-mir-103, oar-mir-10b, oar-mir-143, oar-mir-148a, oar-mir-152, oar-mir-16b, oar-mir-181a-2, oar-mir-200a, oar-mir-200b, oar-mir-200c, oar-mir-23a, oar-mir-26a, oar-mir-29b-1, oar-mir-30a, oar-mir-99a, bta-mir-664b, chi-let-7a, chi-let-7f, chi-mir-103, chi-mir-10b, chi-mir-125b, chi-mir-126, chi-mir-141, chi-mir-143, chi-mir-148a, chi-mir-148b, chi-mir-155, chi-mir-15a, chi-mir-15b, chi-mir-16a, chi-mir-16b, chi-mir-184, chi-mir-192, chi-mir-200a, chi-mir-200b, chi-mir-200c, chi-mir-215, chi-mir-21, chi-mir-223, chi-mir-224, chi-mir-2318, chi-mir-23a, chi-mir-24, chi-mir-26a, chi-mir-27b, chi-mir-296, chi-mir-29a, chi-mir-29b, chi-mir-29c, chi-mir-30a, chi-mir-30e, chi-mir-342, chi-mir-378, chi-mir-451, chi-mir-499, chi-mir-671, chi-mir-99a, chi-mir-99b, bta-mir-378d, ssc-mir-378b, oar-mir-29b-2, ssc-mir-141, ssc-mir-200b, ssc-mir-223, bta-mir-148d
A differential expression of four immune related miRNAs, miR-125b, miR-155, miR-146a, and miR-223 upon stimulation of bovine monocytes with LPS or Staphylococcus aureus enterotoxin B was demonstrated (Dilda et al., 2012).
[score:3]
The 5’ regulatory sequences of active miR-146a promoters are hypomethylated and associated with euchromatic histone modification marks in B lymphoid cells.
[score:2]
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5 |
[+]
score:
4
Other miRNAs from this paper: oar-mir-143, oar-mir-148a, oar-mir-200a, oar-mir-200b, oar-mir-200c, oar-mir-218a, chi-mir-133a, chi-mir-143, chi-mir-145, chi-mir-148a, chi-mir-148b, chi-mir-155, chi-mir-200a, chi-mir-200b, chi-mir-200c, chi-mir-218, chi-mir-29c, chi-mir-34a, chi-mir-34b, chi-mir-34c, chi-mir-9
However, in this study we identified that serine/threonine-protein kinase B-raf (BRAF) as chi- miR-133a-3p, chi-miR-145-5p, chi-miR-146a/200a and two novel miRNA (NC-022308.1-260、NC-022294.1-874) target gene which acts upstream regulatory factor in RAS-RAF-MEK-ERK.
[score:4]
[1 to 20 of 1 sentences]
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6 |
[+]
score:
2
Other miRNAs from this paper: hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3, hsa-let-7b, hsa-let-7c, hsa-let-7d, hsa-let-7e, hsa-let-7f-1, hsa-let-7f-2, hsa-mir-21, hsa-mir-30a, hsa-mir-100, hsa-mir-103a-2, hsa-mir-103a-1, hsa-mir-107, hsa-mir-148a, hsa-mir-30c-2, hsa-mir-30d, hsa-mir-212, hsa-mir-214, hsa-let-7g, hsa-let-7i, hsa-mir-15b, hsa-mir-30b, hsa-mir-143, hsa-mir-146a, hsa-mir-193a, hsa-mir-30c-1, hsa-mir-30e, hsa-mir-375, hsa-mir-378a, hsa-mir-148b, hsa-mir-146b, hsa-mir-487b, hsa-mir-378d-2, hsa-mir-103b-1, hsa-mir-103b-2, hsa-mir-378b, hsa-mir-3175, hsa-mir-378c, hsa-mir-378d-1, hsa-mir-378e, hsa-mir-378f, hsa-mir-378g, hsa-mir-378h, hsa-mir-378i, hsa-mir-378j, chi-let-7a, chi-let-7b, chi-let-7c, chi-let-7d, chi-let-7e, chi-let-7f, chi-let-7g, chi-let-7i, chi-mir-100, chi-mir-103, chi-mir-107, chi-mir-143, chi-mir-146b, chi-mir-148a, chi-mir-148b, chi-mir-15b, chi-mir-193a, chi-mir-214, chi-mir-21, chi-mir-30a, chi-mir-30b, chi-mir-30c, chi-mir-30d, chi-mir-30e, chi-mir-30f, chi-mir-378, chi-mir-487b
In two libraries, let-7, miR-143, miR-148, miR-378, miR-146 and miR-21 were detected with high abundance (Table S1).
[score:1]
However, in late lactation, miR-143, let-7, miR-21, miR-148, miR-30, miR-146, miR-107 and miR-103 were the most abundant, each with more than 100,000 reads.
[score:1]
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