sort by

5 publications mentioning sly-MIR6026

Open access articles that are associated with the species Solanum lycopersicum and mention the gene name MIR6026. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 33
Sly-miR6026, which is predicted to target SlDCL2a, b, and d, was not significantly down-regulated upon SlDCL1 silencing. [score:6]
Therefore, the up-regulation of SlDCl2b and SlDCl2d is probably due to an increase in transcription rather than reduced targeting by sly-miR6026. [score:6]
In addition, a legitimate target site for the 22-nt sly-miR6026 was predicted in the 5′ UTRs of SlDCL2a, b, and d but not in SlDCL2c, which contains a different sequence instead (Fig. 5A). [score:3]
Consistent with this, sly-miR6026 has been predicted to target the Tobacco mosaic virus resistance gene of tomato (TM2, Solyc09g018220) (Li et al., 2012 b ), and ShortStack analysis identified 21-nt small RNA clusters that derived from it (clusters 113162 and 113163) (Supplementary Table S5 available at JXB online), suggesting that similar to miR1507 in Medicago, in tomato, sly-miR6026 -guided cleavage of SlDCL2a, b, and d as well as the NBS–LRR TM2 gene triggers secondary siRNA production. [score:3]
Cleavage by 22-nt miRNAs has been shown to induce the biogenesis of 21-nt secondary siRNAs (Cuperus et al., 2010), raising the possibility that sly-miR6026 acts as a trigger for siRNA biogenesis from SlDCL2a, b, and d. In Medicago, miR1507 has been suggested to target DCL2 as well as NBS–LRR genes (Zhai et al., 2011). [score:3]
Possible explanations include an increase in the expression of either SlDCL4, which is required for 21-nt phased siRNA biogenesis (Yifhar et al., 2012), or SlDCL2b and d, whose transcripts may serve as substrates for sly-miR6026 -mediated cleavage. [score:3]
Sequence alignment between SlDCL2 genes (A) predicted to serve as sly-miR6026 targets. [score:3]
Sly-miR6026 expression was normalized to U6 snRNA and levels are indicated below each panel. [score:3]
Watson–Crick pairing with sly-miR6026 is shown below. [score:1]
RNA gel blots detected a slight decrease in sly-miR6026 upon global and tissue-specific (see below) SlDCL1 silencing (Fig. 5B). [score:1]
Total RNA (5 μg) from the indicated tissues was hybridized with sly-miR6026 antisense probe. [score:1]
[1 to 20 of 11 sentences]
2
[+] score: 6
Interestingly, these 27 members included all the NBS-LRR targets of miR482a (one NBS-LRR target), sly-miR482a (2), sly-miR482c (6), and miR6026-3p (1). [score:5]
Here, we predicted that seven miRNAs act on NBS-LRR gene members, such as miR6024-3p, miR482a, sly-miR482a, sly-miR482c, and miR5083, miR6026-3p and novel_mir_674. [score:1]
[1 to 20 of 2 sentences]
3
[+] score: 6
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR171a, osa-MIR393a, osa-MIR396a, osa-MIR396b, osa-MIR396c, osa-MIR397a, osa-MIR397b, osa-MIR398a, osa-MIR398b, osa-MIR399a, osa-MIR399b, osa-MIR399c, osa-MIR399d, osa-MIR399e, osa-MIR399f, osa-MIR399g, osa-MIR399h, osa-MIR399i, osa-MIR399j, osa-MIR399k, osa-MIR156k, osa-MIR156l, osa-MIR166k, osa-MIR166l, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR168a, osa-MIR168b, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR171b, osa-MIR171c, osa-MIR171d, osa-MIR171e, osa-MIR171f, osa-MIR171g, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR171h, osa-MIR393b, osa-MIR408, osa-MIR172d, osa-MIR171i, osa-MIR167j, osa-MIR166m, osa-MIR166j, osa-MIR396e, mtr-MIR166a, mtr-MIR169a, mtr-MIR399b, mtr-MIR399d, mtr-MIR393a, mtr-MIR399c, mtr-MIR399a, mtr-MIR399e, mtr-MIR156a, mtr-MIR171a, mtr-MIR156b, mtr-MIR167a, mtr-MIR166b, mtr-MIR169c, mtr-MIR169d, mtr-MIR169e, mtr-MIR171b, mtr-MIR166c, mtr-MIR166d, mtr-MIR169f, mtr-MIR156c, mtr-MIR156d, mtr-MIR399f, mtr-MIR399g, mtr-MIR399h, mtr-MIR399i, mtr-MIR399j, mtr-MIR399k, mtr-MIR166e, mtr-MIR156e, mtr-MIR171c, mtr-MIR398a, mtr-MIR172a, mtr-MIR393b, mtr-MIR398b, mtr-MIR168a, mtr-MIR169g, mtr-MIR156f, mtr-MIR399l, mtr-MIR156g, mtr-MIR399m, mtr-MIR399n, mtr-MIR399o, mtr-MIR398c, mtr-MIR156h, mtr-MIR166f, mtr-MIR166g, mtr-MIR171d, mtr-MIR171e, mtr-MIR396a, mtr-MIR396b, mtr-MIR169h, mtr-MIR169b, mtr-MIR156i, mtr-MIR171f, mtr-MIR399p, osa-MIR169r, sly-MIR166a, sly-MIR166b, sly-MIR167a, sly-MIR169a, sly-MIR169b, sly-MIR169c, sly-MIR169d, sly-MIR171a, sly-MIR171b, sly-MIR171c, sly-MIR171d, sly-MIR397, sly-MIR156a, sly-MIR156b, sly-MIR156c, sly-MIR172a, sly-MIR172b, sly-MIR399, osa-MIR827, osa-MIR396f, mtr-MIR2118, osa-MIR2118a, osa-MIR2118b, osa-MIR2118c, osa-MIR2118d, osa-MIR2118e, osa-MIR2118f, osa-MIR2118g, osa-MIR2118h, osa-MIR2118i, osa-MIR2118j, osa-MIR2118k, osa-MIR2118l, osa-MIR2118m, osa-MIR2118n, osa-MIR2118o, osa-MIR2118p, osa-MIR2118q, osa-MIR2118r, mtr-MIR169k, mtr-MIR169j, mtr-MIR399q, osa-MIR396g, osa-MIR396h, osa-MIR396d, osa-MIR5072, mtr-MIR4414a, mtr-MIR4414b, mtr-MIR482, mtr-MIR172b, mtr-MIR172c, mtr-MIR171h, mtr-MIR168b, mtr-MIR399r, mtr-MIR156j, sly-MIR482e, sly-MIR482a, mtr-MIR167b, mtr-MIR168c, mtr-MIR408, mtr-MIR396c, mtr-MIR171g, stu-MIR6024, sly-MIR6024, stu-MIR482c, stu-MIR482b, stu-MIR482a, stu-MIR482d, stu-MIR482e, sly-MIR482b, sly-MIR482c, stu-MIR6025, stu-MIR6026, sly-MIR168a, sly-MIR168b, mtr-MIR169i, mtr-MIR172d, mtr-MIR397, mtr-MIR169l, mtr-MIR399s, mtr-MIR399t, stu-MIR7980a, stu-MIR7983, stu-MIR8007a, stu-MIR8007b, stu-MIR7980b, stu-MIR399a, stu-MIR399b, stu-MIR399c, stu-MIR399d, stu-MIR399e, stu-MIR399f, stu-MIR399g, stu-MIR399h, stu-MIR3627, stu-MIR171b, stu-MIR166a, stu-MIR166b, stu-MIR166c, stu-MIR166d, stu-MIR171a, stu-MIR171c, stu-MIR399i, stu-MIR827, stu-MIR172b, stu-MIR172c, stu-MIR172a, stu-MIR172d, stu-MIR172e, stu-MIR156a, stu-MIR156b, stu-MIR156c, stu-MIR156d, stu-MIR171d, stu-MIR167c, stu-MIR167b, stu-MIR167a, stu-MIR167d, stu-MIR399j, stu-MIR399k, stu-MIR399l, stu-MIR399m, stu-MIR399n, stu-MIR399o, stu-MIR393, stu-MIR398a, stu-MIR398b, stu-MIR396, stu-MIR408a, stu-MIR408b, stu-MIR397, stu-MIR171e, stu-MIR156e, stu-MIR156f, stu-MIR156g, stu-MIR156h, stu-MIR156i, stu-MIR156j, stu-MIR156k, stu-MIR169a, stu-MIR169b, stu-MIR169c, stu-MIR169d, stu-MIR169e, stu-MIR169f, stu-MIR169g, stu-MIR169h, sly-MIR403, sly-MIR166c, sly-MIR156d, sly-MIR156e, sly-MIR396a, sly-MIR167b, sly-MIR482d, sly-MIR169e, sly-MIR396b, sly-MIR171e, sly-MIR172c, sly-MIR408, sly-MIR172d, sly-MIR827, sly-MIR393, sly-MIR398a, sly-MIR399b, sly-MIR6025, sly-MIR169f, sly-MIR171f
Apart from the six NBS-LRR PHAS loci, we also found another PHAS loci annotated as tomato DCL2 gene that is targeted by miR6026. [score:3]
The only non NBS-LRR PHAS gene found in this study was annotated as the tomato DCL2 and was targeted by miR6026. [score:3]
[1 to 20 of 2 sentences]
4
[+] score: 2
Using high-throughput sequencing and homology -based computational research, we have previously identified a number of tomato miRNAs involved in tomato– P. infestans interaction including miR482, miR172, miR6024, miR6026, miR6027, etc. [score:1]
Various letters indicate significant difference among samples, and letters shared in common between or among the groups indicate no significant difference (P < 0.05) To gain insight into the molecular mechanisms responsible for the late blight resistance, we previously used high-throughput sequencing to identify P. infestans -induced miRNAs in tomato, including miR169, miR398, miR482, miR6024, miR6026, and miR6027 25, 47, 48. [score:1]
[1 to 20 of 2 sentences]
5
[+] score: 1
Whereas two miRNAs, miR397–5p and miR398b-3p, were common in the stamen and pistil libraries at 2 d after heat-stress treatment, 12 known miRNAs belonging to the miR159, miR160, miR319, miR393, miR482, miR1918, miR6026, and miR6027 families (Fig.   5a, Additional file 1: Table S5) were common at 12 d after heat-stress treatment. [score:1]
[1 to 20 of 1 sentences]