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10 publications mentioning osa-MIR1320

Open access articles that are associated with the species Oryza sativa and mention the gene name MIR1320. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

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[+] score: 29
0146946.g006 Fig 6 These genes were identified as LRR receptor-like serine/threonine-protein kinase (LOC_Os11g40970) (target of Osa-miR159b), LRR receptor-like serine/threonine-protein kinase (LOC_Os02g40200) (target of Osa-miR444e), Glucan endo-1,3-beta-glucosidase (LOC_Os01g71340) (target of Osa-miR1320-5p), Cysteine-rich receptor-like protein kinase 8 (LOC_Os07g35680) (target of Osa-miR1429-5p and Osa-miR1432-3p), Brown planthopper -induced resistance protein 6 (LOC_Os02g57280) (target of Osa-miR1432-5p), heat shock protein DnaJ (LOC_Os01g53020) (target of Osa-miR172d-3p), Wall -associated receptor kinase 5 (LOC_Os04g21820) (target of Osa-miR396c-3p), and Putative disease resistance protein RGA4 (LOC_Os10g04570) (target of Osa-miR5072). [score:19]
However, both the 5p and 3p of miR-1320, -1432, and -172d were significantly up-regulated by RSV infection whereas osa-miR156c-3p, -156g-3p, -156j-3p, osa-miR167a-3p, -167e-3p, -167h-3p, -167i-3p, which have been thought to be miRNA*s and to be subject to degradation during miRNA biogenesis [39], accumulated to significantly higher levels in RSV-infected plants than their down-regulated counterparts. [score:7]
Both 5p and 3p of miR-1320, -1432, -172d, -156c, -156g, -156j, -167a, -167e, -167h, and -167i were negatively correlated with their targets by RSV infection (S6 Table), suggesting that all of them may play a role in response to infection. [score:3]
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[+] score: 27
Of the predicted targets of up-regulated miRNA during meiosis, we identified four genes, including LOC_Os01g64100 (predicted by osa-miR1320-5p_L-1R+1) encoded glycosyl hydrolase, LOC_Os11g02400 (predicted by osa-miR5788) annotated as LTPL8-Protease inhibitor/seed storage/LTP family protein precursor, LOC_Os12g02330 (predicted by osa-miR5788) documented as LTPL13-Protease inhibitor/seed storage/LTP family protein precursor, and LOC_Os08g39000 (predicted by osa-MIR6250-p5) annotated as expressed protein; and these four predicted target genes were up-regulated in autotetraploid compared to diploid rice [14] (Table S11). [score:16]
A total of 142 miRNAs were specific/differentially expressed in the three pollen development stages (i. e., 35, 34 and 73 in PMA, MA and SCP, respectively), which accounted for 82.56% of the DEM, and only four miRNAs (osa-MIR5083-p5, osa-miR6250_R+1, osa-miR1320-5p_L-1R+1 and osa-miR1432-5p_R+1) were found to be differentially co-up-regulated in all three pollen development stages (Figure 3C; Table S7). [score:8]
Of these 25 genes, LOC_Os01g64100 (predicted by osa-miR1320-5p_L-1R+1) and LOC_Os01g57610 (predicted by osa-miR1436_L+3_1ss5CT) exhibited up-regulation in SCP of autotetraploid compared to diploid rice [14]. [score:3]
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[+] score: 12
Moreover, six miRNAs, including osa-miR160e-5p, osa-miR166i-3p_L+2R-2, osa-miR167e-3p, osa-miR167i-3p, osa-miR390-5p and osa-miR3979-5p_R+1, were up-regulated in leaves at least in two stages of grain-filling in rice N2Y6, and 11 miRNAs, including osa-miR1320-3p, osa-miR169h_R-1, osa-miR169i_R-1, osa-miR169j_R-1, osa-miR169k_R-1, osa-miR169l_R-1, osa-miR169m_R-1, osa-MIR1883b-p5_1ss6TA_L+12R-15, osa-miR2863b_L-1R+1, osa-MIR2871b-p5 and osa-miR5508, were down-regulated in leaves at least in two stages of grain-filling in rice N2Y6 (Table 2). [score:7]
To validate the sequencing results and the expression level of miRNAs, the differential expression pattern of five miRNAs, osa-miR1320-5p, osa-miR164a, osa-miR167c-5p_R-1, osa-miR2871a-5p_L+1R-4 and osa-miR530-3p, which showed significant changes by sequencing in the two rice, were randomly selected for qRT-PCR analysis. [score:5]
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[+] score: 10
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR164a, osa-MIR164b, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR171a, osa-MIR393a, osa-MIR394, osa-MIR395f, osa-MIR396a, osa-MIR396b, osa-MIR396c, osa-MIR397a, osa-MIR397b, osa-MIR398b, osa-MIR156k, osa-MIR156l, osa-MIR159a, osa-MIR159b, osa-MIR159c, osa-MIR159d, osa-MIR159e, osa-MIR159f, osa-MIR319a, osa-MIR319b, osa-MIR160f, osa-MIR164c, osa-MIR164d, osa-MIR164e, osa-MIR166k, osa-MIR166l, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR168a, osa-MIR168b, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR171b, osa-MIR171c, osa-MIR171d, osa-MIR171e, osa-MIR171f, osa-MIR171g, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR171h, osa-MIR393b, osa-MIR408, osa-MIR172d, osa-MIR171i, osa-MIR167j, osa-MIR166m, osa-MIR166j, osa-MIR164f, osa-MIR390, osa-MIR396e, osa-MIR444a, osa-MIR528, osa-MIR529a, osa-MIR810a, osa-MIR812a, osa-MIR812b, osa-MIR812c, osa-MIR812d, osa-MIR812e, osa-MIR818a, osa-MIR818b, osa-MIR818c, osa-MIR818d, osa-MIR818e, osa-MIR820a, osa-MIR820b, osa-MIR820c, osa-MIR529b, osa-MIR1425, osa-MIR1430, osa-MIR1432, osa-MIR169r, osa-MIR444b, osa-MIR444c, osa-MIR444d, osa-MIR444e, osa-MIR444f, osa-MIR810b, osa-MIR1440a, osa-MIR531b, osa-MIR1847, osa-MIR1848, osa-MIR1861a, osa-MIR1861b, osa-MIR1861c, osa-MIR1861d, osa-MIR1861e, osa-MIR1861f, osa-MIR1861g, osa-MIR1861h, osa-MIR1861i, osa-MIR1861j, osa-MIR1861k, osa-MIR1861l, osa-MIR1861m, osa-MIR1861n, osa-MIR1865, osa-MIR812f, osa-MIR1874, osa-MIR812g, osa-MIR812h, osa-MIR812i, osa-MIR812j, osa-MIR827, osa-MIR2090, osa-MIR396f, osa-MIR2118c, osa-MIR2863a, osa-MIR2863b, osa-MIR396g, osa-MIR396h, osa-MIR396d, osa-MIR812k, osa-MIR812l, osa-MIR812m, osa-MIR3979, osa-MIR3980a, osa-MIR3980b, osa-MIR812n, osa-MIR812o, osa-MIR3981, osa-MIR5082, osa-MIR2863c, osa-MIR5337a, osa-MIR812p, osa-MIR812q, osa-MIR812r, osa-MIR812s, osa-MIR812t, osa-MIR812u, osa-MIR812v, osa-MIR1440b, osa-MIR818f, osa-MIR1861o
The Venn diagram (Fig 2B) showed that 31 miRNAs were common in the shoot and root, and 24 miRNAs were up-regulated, osa-miR393b-3p and oru-miR75 were down-regulated, whereas five miRNAs, i. e., oru-miR76, osa-miR1320-5p, osa-miR1432-5p, osa-miR166e-3p, and osa-miR398b, exhibited an opposite expression pattern in the shoot and root (Fig 2C). [score:9]
2, miR390-3p, miR531b, miR1430, miR1847.2, miR1865-5p, miR1874-3p, and miR5082, whereas 24 miRNAs were identified that were significantly accumulated in the whole roots, including miR156, miR164, miR166, osa-miR169, miR171, miR393, miR408, miR528, miR529, osa-miR812, miR1320, osa-miR1432, miR1861, miR3979, etc. [score:1]
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[+] score: 4
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR395b, osa-MIR395d, osa-MIR395e, osa-MIR395g, osa-MIR395h, osa-MIR395i, osa-MIR395j, osa-MIR395k, osa-MIR395l, osa-MIR395s, osa-MIR395t, osa-MIR395c, osa-MIR395a, osa-MIR395f, osa-MIR395u, osa-MIR398a, osa-MIR398b, osa-MIR399a, osa-MIR399b, osa-MIR399c, osa-MIR399d, osa-MIR399e, osa-MIR399f, osa-MIR399g, osa-MIR399h, osa-MIR399i, osa-MIR399j, osa-MIR399k, osa-MIR156k, osa-MIR156l, osa-MIR159a, osa-MIR159b, osa-MIR159c, osa-MIR159d, osa-MIR159e, osa-MIR159f, osa-MIR160e, osa-MIR160f, osa-MIR166k, osa-MIR166l, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR168a, osa-MIR168b, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR408, osa-MIR172d, osa-MIR167j, osa-MIR166m, osa-MIR166j, osa-MIR444a, osa-MIR528, osa-MIR530, osa-MIR531a, osa-MIR535, osa-MIR395m, osa-MIR395n, osa-MIR395o, osa-MIR395p, osa-MIR395q, osa-MIR395v, osa-MIR395w, osa-MIR395r, osa-MIR812a, osa-MIR812b, osa-MIR812c, osa-MIR812d, osa-MIR812e, osa-MIR1429, osa-MIR1431, osa-MIR1432, osa-MIR169r, osa-MIR444b, osa-MIR444c, osa-MIR444d, osa-MIR444e, osa-MIR444f, osa-MIR531b, osa-MIR1857, osa-MIR1862a, osa-MIR1862b, osa-MIR1862c, osa-MIR812f, osa-MIR1862d, osa-MIR1862e, osa-MIR812g, osa-MIR812h, osa-MIR812i, osa-MIR812j, osa-MIR1883a, osa-MIR1883b, osa-MIR827, osa-MIR1846e, osa-MIR2121a, osa-MIR2864, osa-MIR395x, osa-MIR395y, osa-MIR812k, osa-MIR812l, osa-MIR812m, osa-MIR1862f, osa-MIR1862g, osa-MIR3979, osa-MIR3980a, osa-MIR3980b, osa-MIR812n, osa-MIR812o, osa-MIR5083, osa-MIR5143a, osa-MIR5156, osa-MIR5513, osa-MIR812p, osa-MIR812q, osa-MIR812r, osa-MIR812s, osa-MIR812t, osa-MIR812u, osa-MIR812v, osa-MIR6248, osa-MIR6249a, osa-MIR531c
On the other hand, the 38 miRNAs differentially expressed only in PC represented eight families (miR166, miR395, miR812, miR827, miR1320, miR1862, miR3980 and miR6248) (Table  4). [score:3]
The remaining miRNAs, including miR530-3p, miR395g/l/m/n/p/q/r/s/y, miR528-5p, miR399a/b/c/d/j, miR1320-3p and miR6249a/b, were shown to respond to certain abiotic threats 36, 38– 40, and based on this study, these miRNAs may respond to BPH attack. [score:1]
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[+] score: 3
We experimentally validated the expression of 10 DE miRNAs, including 8 known (miR156a, miR397b, miR399a/d/e, miR528, miR530-5p, miR827a, miR1318, and miR1320) and 2 novel (novel-1 and 2) miRNAs, using real-time quantitative RT-PCR (qRT-PCR). [score:3]
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[+] score: 1
1, miR-1850, miR-1868, miR-1320, miR-1435, and miR-1876 [13]. [score:1]
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[+] score: 1
MicroRNAs miR408-5p, miR2873a, miR1432-5p, miR1320-5p and miR397b were highly enriched in flag leaf of both cultivars (Supplementary Fig.   S3a). [score:1]
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9
[+] score: 1
The nucleotide diversity among the studied Oryza species varied from 0.0028 at pre-miR1425 locus to 0.2562 at pre-miR1320 locus. [score:1]
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10
[+] score: 1
2, osa-miR171f-5p, osa-miR393a, osa-miR408-5p, osa-miR435, osa-miR528-5p, osa-miR529b, osa-miR812i/osa-miR812j/osa-miR812g/osa-miR812h, osa-miR812r, osa-miR812s, osa-miR1318-3p, osa-miR1320-5p, osa-miR1425-3p, osa-miR1427, osa-miR1432, osa-miR1861h/osa-miR1861j, osa-miR3979-3p, osa-miR5788, osa-miR5795 and osa-miR5802) were highly accumulated in the whole roots (Additional file 2). [score:1]
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