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3 publications mentioning ptc-MIR1446a

Open access articles that are associated with the species Populus trichocarpa and mention the gene name MIR1446a. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 4
Other miRNAs from this paper: ptc-MIR156a, ptc-MIR156b, ptc-MIR156c, ptc-MIR156d, ptc-MIR156e, ptc-MIR156f, ptc-MIR156g, ptc-MIR156h, ptc-MIR156i, ptc-MIR156j, ptc-MIR156k, ptc-MIR159a, ptc-MIR159b, ptc-MIR159d, ptc-MIR159e, ptc-MIR159c, ptc-MIR160a, ptc-MIR160b, ptc-MIR160c, ptc-MIR160d, ptc-MIR160e, ptc-MIR160f, ptc-MIR160g, ptc-MIR160h, ptc-MIR164a, ptc-MIR164b, ptc-MIR164c, ptc-MIR164d, ptc-MIR164e, ptc-MIR164f, ptc-MIR166a, ptc-MIR166b, ptc-MIR166c, ptc-MIR166d, ptc-MIR166e, ptc-MIR166f, ptc-MIR166g, ptc-MIR166h, ptc-MIR166i, ptc-MIR166j, ptc-MIR166k, ptc-MIR166l, ptc-MIR166m, ptc-MIR166n, ptc-MIR166o, ptc-MIR166p, ptc-MIR166q, ptc-MIR167a, ptc-MIR167b, ptc-MIR167c, ptc-MIR167d, ptc-MIR167e, ptc-MIR167f, ptc-MIR167g, ptc-MIR167h, ptc-MIR169a, ptc-MIR169aa, ptc-MIR169ab, ptc-MIR169ac, ptc-MIR169ad, ptc-MIR169ae, ptc-MIR169af, ptc-MIR169b, ptc-MIR169c, ptc-MIR169d, ptc-MIR169e, ptc-MIR169f, ptc-MIR169g, ptc-MIR169h, ptc-MIR169i, ptc-MIR169j, ptc-MIR169k, ptc-MIR169l, ptc-MIR169m, ptc-MIR169n, ptc-MIR169o, ptc-MIR169p, ptc-MIR169q, ptc-MIR169r, ptc-MIR169s, ptc-MIR169t, ptc-MIR169u, ptc-MIR169v, ptc-MIR169w, ptc-MIR169x, ptc-MIR169y, ptc-MIR169z, ptc-MIR171a, ptc-MIR171b, ptc-MIR171c, ptc-MIR171d, ptc-MIR171e, ptc-MIR171f, ptc-MIR171g, ptc-MIR171h, ptc-MIR171i, ptc-MIR172a, ptc-MIR172b, ptc-MIR172c, ptc-MIR172d, ptc-MIR172e, ptc-MIR172f, ptc-MIR172g, ptc-MIR172h, ptc-MIR172i, ptc-MIR319a, ptc-MIR319b, ptc-MIR319c, ptc-MIR319d, ptc-MIR319e, ptc-MIR319f, ptc-MIR319g, ptc-MIR319h, ptc-MIR319i, ptc-MIR390a, ptc-MIR390b, ptc-MIR390c, ptc-MIR390d, ptc-MIR393a, ptc-MIR393b, ptc-MIR393c, ptc-MIR395a, ptc-MIR395b, ptc-MIR395c, ptc-MIR395d, ptc-MIR395e, ptc-MIR395f, ptc-MIR395g, ptc-MIR395h, ptc-MIR395i, ptc-MIR395j, ptc-MIR396a, ptc-MIR396b, ptc-MIR396c, ptc-MIR396d, ptc-MIR396e, ptc-MIR396f, ptc-MIR396g, ptc-MIR398a, ptc-MIR398b, ptc-MIR398c, ptc-MIR171k, ptc-MIR171l, ptc-MIR171m, ptc-MIR171j, ptc-MIR1446b, ptc-MIR1446c, ptc-MIR1446d, ptc-MIR1446e, ppe-MIR171f, ppe-MIR171h, ppe-MIR171a, ppe-MIR171e, ppe-MIR169e, ppe-MIR398a, ppe-MIR319a, ppe-MIR319b, ppe-MIR171g, ppe-MIR171b, ppe-MIR171c, ppe-MIR398b, ptc-MIR3627a, ptc-MIR156l, ptc-MIR169ag, ptc-MIR395k, ptc-MIR3627b, ppe-MIR156a, ppe-MIR156b, ppe-MIR156c, ppe-MIR156d, ppe-MIR156e, ppe-MIR156f, ppe-MIR156g, ppe-MIR156h, ppe-MIR156i, ppe-MIR159, ppe-MIR160a, ppe-MIR160b, ppe-MIR164a, ppe-MIR164b, ppe-MIR164c, ppe-MIR164d, ppe-MIR166a, ppe-MIR166b, ppe-MIR166c, ppe-MIR166d, ppe-MIR166e, ppe-MIR167a, ppe-MIR167b, ppe-MIR167c, ppe-MIR167d, ppe-MIR169a, ppe-MIR169b, ppe-MIR169c, ppe-MIR169d, ppe-MIR169f, ppe-MIR169g, ppe-MIR169h, ppe-MIR169i, ppe-MIR169j, ppe-MIR169k, ppe-MIR169l, ppe-MIR171d, ppe-MIR172a, ppe-MIR172b, ppe-MIR172c, ppe-MIR172d, ppe-MIR390, ppe-MIR393a, ppe-MIR393b, ppe-MIR395a, ppe-MIR395b, ppe-MIR395c, ppe-MIR395d, ppe-MIR395e, ppe-MIR395f, ppe-MIR395g, ppe-MIR395h, ppe-MIR395i, ppe-MIR395j, ppe-MIR395k, ppe-MIR395l, ppe-MIR395m, ppe-MIR395n, ppe-MIR395o, ppe-MIR396a, ppe-MIR396b, ppe-MIR3627
Among the identified conserved miRNA set, five conserved miRNA families (miR1446, miR473, miR479, miR3629, and miR3627) and several non-conserved miRNAs were reported only in tree species (Populus trichocarpa Citrus trifolia, and Prunus persica (L. ) Batsch). [score:1]
Within the other conserved miRNA families, five families (miR1446, miR473, miR479, miR3629, and miR3627) were reported only in tree species (Populus trichocarpa, Citrus trifolia, and Prunus persica). [score:1]
Among these miRNA families, five (miR1446, miR473, miR479, miR3629, and miR3627) were reported only in tree species (Populus trichocarpa, Citrus trifolia, and Prunus persica (L. ) Batsch). [score:1]
For instance, it was suggested that miR1446 and miR473 may play important roles in the growth of trees such as the formation of specialized woody tissue or in the response of trees to mechanical stress [9]. [score:1]
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2
[+] score: 3
Other miRNAs from this paper: ptc-MIR159a, ptc-MIR159b, ptc-MIR159d, ptc-MIR159e, ptc-MIR159c, ptc-MIR160a, ptc-MIR160b, ptc-MIR160c, ptc-MIR160d, ptc-MIR160e, ptc-MIR160f, ptc-MIR160g, ptc-MIR160h, ptc-MIR164a, ptc-MIR164b, ptc-MIR164c, ptc-MIR164d, ptc-MIR164e, ptc-MIR164f, ptc-MIR167a, ptc-MIR167b, ptc-MIR167c, ptc-MIR167d, ptc-MIR167e, ptc-MIR167f, ptc-MIR167g, ptc-MIR167h, ptc-MIR168a, ptc-MIR168b, ptc-MIR169a, ptc-MIR169aa, ptc-MIR169ab, ptc-MIR169ac, ptc-MIR169ad, ptc-MIR169ae, ptc-MIR169af, ptc-MIR169b, ptc-MIR169c, ptc-MIR169d, ptc-MIR169e, ptc-MIR169f, ptc-MIR169g, ptc-MIR169h, ptc-MIR169i, ptc-MIR169j, ptc-MIR169k, ptc-MIR169l, ptc-MIR169m, ptc-MIR169n, ptc-MIR169o, ptc-MIR169p, ptc-MIR169q, ptc-MIR169r, ptc-MIR169s, ptc-MIR169t, ptc-MIR169u, ptc-MIR169v, ptc-MIR169w, ptc-MIR169x, ptc-MIR169y, ptc-MIR169z, ptc-MIR171a, ptc-MIR171b, ptc-MIR171c, ptc-MIR171d, ptc-MIR171e, ptc-MIR171f, ptc-MIR171g, ptc-MIR171h, ptc-MIR171i, ptc-MIR390a, ptc-MIR390b, ptc-MIR390c, ptc-MIR390d, ptc-MIR394a, ptc-MIR394b, ptc-MIR395a, ptc-MIR395b, ptc-MIR395c, ptc-MIR395d, ptc-MIR395e, ptc-MIR395f, ptc-MIR395g, ptc-MIR395h, ptc-MIR395i, ptc-MIR395j, ptc-MIR396a, ptc-MIR396b, ptc-MIR396c, ptc-MIR396d, ptc-MIR396e, ptc-MIR396f, ptc-MIR396g, ptc-MIR398a, ptc-MIR403a, ptc-MIR408, ptc-MIR472a, ptc-MIR472b, ptc-MIR482a, ptc-MIR171k, ptc-MIR171l, ptc-MIR171m, ptc-MIR171j, ptc-MIR1444a, ptc-MIR1444b, ptc-MIR1444c, ptc-MIR482d, ptc-MIR169ag, ptc-MIR482b, ptc-MIR395k, ptc-MIR482c, ptc-MIR1444d, ptc-MIR1444e
1POPTR_0007s00550.1III3372284NADP -dependentPtc-miR530bPOPTR_0002s24070.1III4241044Photosystem I subunit LPtc-miR1444aPOPTR_0014s10790.1III25691593.5Preprotein translocase secAPtc-miR1444aPOPTR_0014s11380.1III23681353.5Pentatricopeptide (PPR)Ptc-miR1446a-ePOPTR_0014s06190.1/2II6775114Unfertilized embryo sac 10Ptc-miR1446a-ePOPTR_0001s34380.1/2III295178416S rRNA processingPtc-miR1446a-ePOPTR_0011s13770.2III552043.5UBQ10 (Polyubiquitin 10)Ptc-miRn6 POPTR_0001s11990.1/2/3III259981Function unknownPtc-miRn7 POPTR_0001s11990.1/2/3III259980.5Function unknownPtc-miRn7POPTR_0014s01740.1/2II7233663.5APT1 (Adenine phosphoribosyl      transferase 1)Ptc-miRn8POPTR_0001s40480.1III65614434Glycolate oxidasePtc-miRn13POPTR_0018s08940.1III16051164Abnormal inflorescence meristemPtc-miRn26 POPTR_0016s00510.1III12332654Heat shock protein 81-4Ptc-miRn30POPTR_0002s07540.1III528753.5SKP2A (F-box protein)Ptc-miRn32POPTR_0014s16800.1III504934Beta-catenin repeat family proteinPtc-miRn33POPTR_0019s08960.1III32441344Function unknownPtc-miRn37POPTR_0003s08800.1III5851084Pentatricopeptide (PPR)Ptc-miRn38POPTR_0011s17280.1III5841704PEX5 (Peroxin 5)      Signal-1 bindingPtc-miRn40 POPTR_0001s07220.1III305792mTERF(mitochondrial transcription      termination factor family protein)Ptc-miRn40POPTR_0005s20140.1III10301194Thylakoidal ascorbate peroxidasePtc-miRn49POPTR_0011s01280.1III791904Copper/zinc-superoxide             dismutase 2 ‘Cleavage site’, the cleavage site location at the area of coding sequence; ‘Position penalty score’, the same penalty score as the prediction of new miRNA targets; ‘MFE’, minimum free energy of the stem loop structure. [score:3]
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3
[+] score: 1
Five miRNAs (Ptc-miR1446a-e, Ptc-miR481ab, Ptc-miR481cd, Ptc-miR6432 and Ptc-miR827) were encoded in the top 200 DMRs in every context (CpG, CHG and CHH). [score:1]
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