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12 publications mentioning dme-mir-79

Open access articles that are associated with the species Drosophila melanogaster and mention the gene name mir-79. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

[+] score: 14
Figure 1B shows that miR-79-3p and miR-308-3p are repressed more than expected from the expression level of the specific targeting microRNA alone. [score:5]
A number of microRNA/target duplexes display low stability and high repression per expressed copy, including let-7-5p, miR-79-3p, miR-1-3p, miR-308-5p and miR-308-3p. [score:5]
Just four of these cases (miR-307a-5p, miR-79-3p, miR-970-5p and miR-308-3p) are targeted by other microRNAs that are expressed at similar or higher levels than the microRNA for which the assay was designed. [score:4]
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[+] score: 9
The larger reduction in wing length observed for the UAS-miR-9b/79/306 line, which induces overexpression of both miR-9b and miR-79, is consistent with the fact that both miR-9b and miR-79 have very similar sequences and are likely capable of regulating the same targets. [score:6]
The largest and most significant reductions in wing length are induced by overexpression of miR-9a, miR-9b and miR-79, which are all members of the conserved miR-9 miRNA family (Fig. 1c). [score:3]
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[+] score: 8
Furthermore, many targets of Notch signaling were also predicted as targets of the Bearded-box microRNAs miR-4 and miR-79 (E(spl)m5, Bearded, E(spl)mγ, and Tom) and of the K-box microRNAs miR-2 and miR-11 (E(spl)m5, E(spl)m2, E(spl)mδ, and E(spl)m3), consistent with previous observations [27]. [score:5]
The Notch gene Bearded is recovered as a target of miR-4 (or miR-79, equivalently). [score:3]
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[+] score: 7
Six miRNAs (miR-279, miR-33, miR-79, miR-9, miR-S5 and miR-S12) were significantly down-regulated by more than twofold. [score:4]
Moreover, a set of phagocytosis-related genes, such as myosin, actin, Arp2-Arp3 (Arp2/3), the serine/threonine kinase PAK and several members of the small G protein family, were enriched among the target genes of miR-79, suggesting that phagocytosis is an important immune strategy deployed by the host against virus infection [34]. [score:3]
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[+] score: 5
The target sets for the miRNAs targeting the Brd box, miR-4 and miR-79, are also enriched with genes involved in the Notch signaling pathway (p < 10 [−5] in both cases). [score:5]
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[+] score: 3
gambiae and D. melanogaster, miR-304 is closely flanked by miR-12 and miR-283 while miR-306 is in a different cluster with miR-9b and miR-79 (Figure 3). [score:1]
Interestingly, miR-304 is closely flanked by miR-12 and miR-283 while miR-306 is in a different cluster with miR-9b and miR-79 (Figure 3). [score:1]
gambiae miR-9b and miR-79 is noted on miRBase, but not miR-306; clustering of An. [score:1]
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[+] score: 3
Other miRNAs from this paper: hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3, hsa-let-7b, hsa-let-7c, hsa-let-7d, hsa-let-7e, hsa-let-7f-1, hsa-let-7f-2, hsa-mir-27a, hsa-mir-29a, hsa-mir-101-1, dme-mir-1, dme-mir-2a-1, dme-mir-2a-2, dme-mir-2b-1, dme-mir-2b-2, dme-mir-10, mmu-let-7g, mmu-let-7i, mmu-mir-1a-1, mmu-mir-101a, mmu-mir-124-3, mmu-mir-126a, mmu-mir-133a-1, mmu-mir-137, mmu-mir-140, mmu-mir-142a, mmu-mir-155, mmu-mir-10b, mmu-mir-183, mmu-mir-193a, mmu-mir-203, mmu-mir-143, hsa-mir-10a, hsa-mir-10b, hsa-mir-34a, hsa-mir-183, hsa-mir-199b, hsa-mir-203a, hsa-mir-210, hsa-mir-222, hsa-mir-223, dme-mir-133, dme-mir-34, dme-mir-124, dme-mir-210, dme-mir-87, mmu-mir-295, mmu-mir-34c, mmu-mir-34b, mmu-let-7d, dme-let-7, dme-mir-307a, dme-mir-2c, hsa-let-7g, hsa-let-7i, hsa-mir-1-2, hsa-mir-124-1, hsa-mir-124-2, hsa-mir-124-3, hsa-mir-133a-1, hsa-mir-133a-2, hsa-mir-137, hsa-mir-140, hsa-mir-142, hsa-mir-143, hsa-mir-126, hsa-mir-193a, mmu-let-7a-1, mmu-let-7a-2, mmu-let-7b, mmu-let-7c-1, mmu-let-7c-2, mmu-let-7e, mmu-let-7f-1, mmu-let-7f-2, mmu-mir-29a, mmu-mir-27a, mmu-mir-34a, mmu-mir-101b, hsa-mir-1-1, mmu-mir-1a-2, hsa-mir-155, mmu-mir-10a, mmu-mir-210, mmu-mir-223, mmu-mir-222, mmu-mir-199b, mmu-mir-124-1, mmu-mir-124-2, hsa-mir-101-2, hsa-mir-34b, hsa-mir-34c, hsa-mir-378a, mmu-mir-378a, mmu-mir-133a-2, mmu-mir-133b, hsa-mir-133b, mmu-mir-411, hsa-mir-193b, hsa-mir-411, mmu-mir-193b, hsa-mir-944, dme-mir-193, dme-mir-137, dme-mir-994, mmu-mir-1b, mmu-mir-101c, hsa-mir-203b, mmu-mir-133c, mmu-let-7j, mmu-let-7k, mmu-mir-126b, mmu-mir-142b, mmu-mir-124b
Such seed shift, as previously reported (50), was also identified in miR-133-3p and miR-137-3p across fruitfly and human/mouse (Table 3), and found in miR-79-3p between fruitfly and worm. [score:1]
Similar observations were made for miR-124, miR-137, miR-193, miR-210, miR-2, miR-79 and miR87 across species, with miRNAs following the loop-counting rule having lower arm abundances of 5′-isomiRs. [score:1]
We observed that miRNA orthologues (miR-10, miR-133, miR-137 and miR-79 in Table 3) swapped major miRNAs and 5′-isomiRs and had largely different 5′-isomiR arm abundances across human, mouse, fruitfly and worm. [score:1]
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[+] score: 2
Other examples of clustered miRNAs or multicopy miRNAs include: novel miRNA C5152a antisense to C5152b; novel C5303 overlapping ame-mir-137; ame-mir-9b overlapping the ame-mir-79 locus, but on the opposite strand; ame-mir-12 near ame-mir-283; ame-mir-275 near ame-mir-305; ame-mir-277 near ame-mir-317 and ame-mir-34; C1504 near ame-mir-375; and ame-let-7 on the same scaffold as ame-mir-100. [score:1]
Predicted ame-miR-9b and ame-mir-79 are identical to known miRNAs. [score:1]
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[+] score: 1
And ten pre-miRNAs also predicted mature parts on the star (*) arm (mir-305, mir-79, let-7, mir-2a-2, mir-8, mir-7, mir-9a, mir-316, mir-34, mir-12). [score:1]
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[+] score: 1
37), thus leaving 4% as conclusive false positives (miR-14, miR-79, miR-307 and miR-975; dark blue in Fig. 2b and ). [score:1]
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[+] score: 1
Other miRNAs from this paper: dme-mir-7, bmo-mir-7, bmo-mir-79
The minimum free energy for hybridization as predicted by mFold analysis is −28.2 kcal/mol between BmEm4 and bmo-mir-7 and −17.6 kcal/mol between BmEm4 and bmo-mir-79 (Figure 8(a)). [score:1]
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[+] score: 1
This UTR has been experimentally demonstrated to contain three binding sites for miR-4/miR-79 and one binding site for miR-7 (Lai et al. 2005). [score:1]
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