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43 publications mentioning ath-MIR167b

Open access articles that are associated with the species Arabidopsis thaliana and mention the gene name MIR167b. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 126
Moreover, RNA seq analysis of very young flower buds in control and transgenic MIR167 lines showed that SpARF6A and SpARF8B were most significantly down-regulated (3 and 1.7-fold respectively), whereas SpARF8A was not down-regulated in these tissues (Supplementary Table S2 available at JXB online). [score:7]
As miR167 regulates ARF6 and ARF8 genes in both species, we expected that plasmid pB7WG2-MIR167a, which expresses Arabidopsis MIR167a under the control of the CaMV 35S promoter (Wu et al., 2006), would target tomato SpARF6 and SpARF8 genes. [score:6]
It has been experimentally determined in Arabidopsis that miRNA167 regulates expression of ARF6 and ARF8 and that overexpression of the miR167 precursor gene MIR167a phenocopies the arf6 arf8 double mutant (Ru et al., 2006; Wu et al., 2006). [score:6]
Therefore, the data demonstrated that increased miR167 expression in the transgenic tomato plants led to reduced expression of ARF6 and ARF8 resulting in altered developmental phenotypes. [score:6]
of RNA isolated from anthesis-stage flowers showed that the lines with strong phenotypes had a significant reduction in the expression of SpARF6A and SpARF8A/B (Fig. 5A) as well as increased miR167 expression over endogenous levels (Fig. 5B). [score:5]
b, The 185 genes that were differentially expressed both owing to overexpression of MIR167 in tomato and in the Arabidopsis arf6 arf8 double mutant. [score:5]
Cultivated tomato miR167 was initially identified in a conventional small RNA cloning approach, and its expression pattern was developmentally regulated based on small RNA gel blot (Itaya et al., 2008) and deep sequencing (http://smallrna. [score:5]
The Arabidopsis miR167 regulates the expression of AtARF6 and AtARF8. [score:4]
Identification of MIR167 in tomatoThe Arabidopsis miR167 regulates the expression of AtARF6 and AtARF8. [score:4]
The putative importance of ARF6 and ARF8 in plant development is suggested by the observation that they are probably targets of microRNA167 (miR167) in all analysed plants (Axtell and Bartel, 2005; Oh et al., 2008; Remington et al., 2004; Xing et al., 2011; Yang et al., 2006). [score:4]
Tomato provides an excellent mo del to test the potentially conserved role of ARF6 and ARF8 in flower development as well as their regulation by miR167. [score:3]
We attempted to find and validate additional targets of miR167 in tomato, which are listed in the miSolRNA database (www. [score:3]
Fig. 5. Gene expression analysis in MIR167 transgenic and wild-type tomato flower and floral organs. [score:3]
The results indicated that these tomato genes are targets of miR167, as are the orthologous ARF6 and ARF8 genes in Arabidopsis. [score:3]
a, All 687 differentially expressed genes between wild-type tomato and MIR167 transgenic lines. [score:3]
Genome biology 14, R36 23618408 Kinoshita N Wang H Kasahara H Liu J Macpherson C Machida Y Kamiya Y Hannah MA Chua NH 2012 IAA-Ala Resistant3, an evolutionarily conserved target of miR167, mediates Arabidopsis root architecture changes during high osmotic stress. [score:3]
In addition to targeting ARF6 and ARF8, it was recently shown that miR167 also guides cleavage of IAA-Ala Resistant 3 (IAR3) transcripts in Arabidopsis (Kinoshita et al., 2012). [score:3]
However, none of them was validated as a likely target of miR167 in the SoMART degradome RNA library database. [score:3]
In addition to SlARF6A and SlARF8A/B, three putative candidate genes (Solyc04g077220, Solyc04g073990, and Solyc11g011980) could be targeted by miR167. [score:3]
IAR3 is important for lateral root growth and thus, further studies on tomato root samples may help clarify whether miR167 could mediate regulation of tomato IAR3. [score:2]
Differentially expressed genes in MIR167 lines compared with LA1589 control in two comparisons. [score:2]
The regulation of ARF6 and ARF8 by miR167 is likely to be highly conserved. [score:2]
Thus far, there is no evidence that miR167 in tomato regulates guided cleavage of any gene other than ARF6A, ARF8A, and ARF8B, consistent with findings from another study (Karlova et al., 2013). [score:2]
Thus, we concluded that tomato has four MIR167 genes that produce miR167, which regulates SlARF6 and SlARF8 genes. [score:2]
Thus, regulation of ARF6 and ARF8 by the miR167 family is conserved between Solanaceae and Brassicaceae. [score:2]
edu) was employed to validate miR167 -mediated regulation of SlARF6A, SlARF8A, and SlARF8B. [score:2]
of MIR167 transgenic lines. [score:1]
In parallel, LA1589 pollen was used to pollinate MIR167-transgenic flowers. [score:1]
The genome sequences surrounding these four putative genes share sequence homology to Ath-MIR167a and Sly-MIR167. [score:1]
Flower buds of LA1589 were emasculated one day before anthesis and pollinated using MIR167- transgenic pollen. [score:1]
Together, this suggests the presence of four MIR167 genes encoding miR167 precursors (Supplementary Fig. S1B available at JXB online). [score:1]
However, we were unable to validate these as bona fide MIR167 genes based on the absence of a strongly supported predicted stem-loop precursor structure using in silico folding analysis (Supplementary Fig. S1C available at JXB online), extremely low reads in small RNA deep sequencing (fewer than 10 reads), and the lack of miRNA* sequences for these candidate genes in deep sequencing data (http://smallrna. [score:1]
Mapped Sly-miR167 -mediated cleaved SlARF6A/SlARF8A/SlARF8B RNAs and the predicted folding of the Sly-miR167 genes. [score:1]
Floral organ lengths of MIR167 and LA1589 control flowers. [score:1]
By using the SoMART degradome RNA library analysis, we demonstrate that miR167 guides the cleavage of SlARF6A, SlARF8A, and SlARF8B transcripts in cultivated tomato, consistent with a previous report (Moxon et al., 2008). [score:1]
We employed the newly developed online software tool SoMART and available small RNA sequencing data from VF36 and Microtom (Li et al., 2012) to evaluate whether SlARF6A and SlARF8A were also targets of miR167. [score:1]
For the hormone experiments, selected floral buds were tagged before the petals in the MIR167- transgenic lines turned white, which corresponded to 1–2 days before anthesis in wild-type plants. [score:1]
No significant differences were found in MIR167 transgenics treated with or without methyl jasmonate. [score:1]
In MIR167, the second inflorescence forms either after 3 or 4 internodes from the first inflorescence. [score:1]
Cross-sections of style and ovary showed similar cellular organization in wild type and transgenic lines, except possibly for the placenta, which seemed smaller in the MIR167 plants (Fig. S3D–M). [score:1]
Fig. 6. SEM of floral organs from MIR167 and control tomato plants. [score:1]
miR167 -mediated cleavage products were found for SlARF6A, SlARF8A, and SlARF8B (Supplementary Fig. S1A available at JXB online). [score:1]
We also found the corresponding miR167* sequences (from the other strand of the stem-loop precursors) for these four genes in the small RNA deep sequencing database (http://smallrna. [score:1]
Identification of MIR167 in tomato. [score:1]
Antisense miR167 (5′-TAGATCATGCTGGCAGCTTCA-3′) and miR166 (5′-GGGGAATGAAGCCTGGTCCGA-3′) probes were prepared by end-labelling with T4-polynucleotide kinase (New England Biolabs, Ipswich MA, USA) in the presence of γ [32]P-ATP. [score:1]
Fig. 4. Phenotypes of the MIR167 transgenic tomato plants. [score:1]
Close-up of the corresponding style regions boxed in white are shown in (F–H) for MIR167 and (N–P) for control. [score:1]
Style morphology of the MIR167 transgenic (E–H) and wild-type (M–P) plants. [score:1]
Pollen tube growth and gynoecium structure in MIR167 and the wild-type LA1589. [score:1]
Thus, we renamed the registered Sly-MIR167 as Sly-MIR167a-1 and the additional three genes as Sly-MIR167a-2, Sly-MIR167a-3, and Sly-MIR167a-4. The predicted precursor structures of these four Sly-MIR167 genes are shown in Supplementary Figure S1B available at JXB online. [score:1]
Identification of ARF6, ARF8, and MIR167 genomic sequences from tomatoBy using the DNA -binding domain of Arabidopsis ARF6 and 8 proteins (defined as amino acids 1 to ~350 by Ulmasov et al., 1999b) as query sequences, four cultivated tomato genes were identified that share a likely common ancestor: SlARF6A (Solyc00g196060), SlARF6B (solyc07g043610/043620), SlARF8A (Solyc03g031970), and SlARF8B (Solyc02g037530). [score:1]
The tomato genome has two additional sequences with high similarity to mature miR167. [score:1]
Previously, tomato miR167 -mediated cleavage of SlARF8B was confirmed by 5′-RACE (Moxon et al., 2008). [score:1]
Mature Sly-miR167 shares an identical sequence with the Arabidopsis miR167. [score:1]
miR167 is found in seed-producing plants from gymnosperms to flowering plants (Axtell and Bartel, 2005). [score:1]
For MIR167, we used the mature microRNA sequence as a query to search for possible MIR167 gene candidates in the tomato genome (http://solgenomics. [score:1]
Identification of ARF6, ARF8, and MIR167 genomic sequences from tomato. [score:1]
However, application of exogenous MeJA did not restore the trichome defect of MIR167 styles, and application of IAA, MeJA, or GA did not restore female fertility (data not shown). [score:1]
The tomato genome contains four putative precursor genes that could encode miR167 even though only one, Sly-MIR167, is registered in miRBase (Griffiths-Jones, 2004; Tomato Genome Consortium, 2012). [score:1]
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2
[+] score: 115
We found that miR159 targets affected anther and petal development even when miR319 targets were suppressed in jaw-D plants (Figure 4C), indicating that MYBs and TCPs work in parallel to trigger miR167 -mediated ARF6/8 regulation. [score:9]
Further complexity comes from miR167 having several isoforms that differ in their expression patterns and in their ability to downregulate their ARF6/8 targets [1]. [score:8]
MiR159 and miR319 regulate directly interacting targets, which in turn control the expression of MIR167 family members during this process. [score:7]
MiR159 and miR319 dampen the expression of their TF targets, which can otherwise lead to miR167 misexpression both individually and cooperatively through engaging in common protein complexes. [score:7]
Differential regulation of MIR167 genes by miR159 and miR319 targetsThe divergent promoter activities of MIR167 family members are paralleled by their different abilities to downregulate ARF6/8, both of which indicate subfunctionalization [1]. [score:7]
The observed difference between the effects of changes in miR167 expression on ARF6/8 mRNA and protein indicated that miR167 acts through both mRNA cleavage and translational inhibition. [score:7]
While the expression of ProARF8:ARF8-GUS was altered in Pro35S:MIM159 and Pro35S:MIM319 plants, that of ProARF8: mARF8-GUS was not, indicating that miR159 and miR319 targets regulate ARF8 by increasing miR167 activity (Figure 3B). [score:6]
In addition to regulation by miR159 and miR319 targets, there is cross-regulation among MIR167 genes, one example being repression of MIR167C in stamen filaments by miR167a. [score:5]
Differential regulation of MIR167 genes by miR159 and miR319 targets. [score:4]
The divergent promoter activities of MIR167 family members are paralleled by their different abilities to downregulate ARF6/8, both of which indicate subfunctionalization [1]. [score:4]
Consistent with a role of miR159, miR167 and miR319 in JA regulation, LOX2 promoter activity was reduced in sepals of Pro35S:MIM319, Pro35S:MIM159 and Pro35S:MIR167c plants (Figure 2C), with ectopic activation at the base of Pro35S: MIM319 pedicels, where MIR319B is normally expressed (Figure 2C, Figure S4C). [score:4]
To determine whether miR159 and miR319 targets are likely to regulate ARF6/8 directly or through miR167, we compared the response of ProARF8: ARF8-GUS and its miRNA insensitive form, ProARF8: mARF8-GUS, to changes in miR159 and miR319 activity (Figure 3B). [score:4]
As an example, expression of the paralogous master regulators ARF6 and ARF8 (“ ARF6/8”) of Arabidopsis thaliana are fine-tuned in specific floral organs by miR167 [1]. [score:4]
All these inputs are required to avoid miR167 misexpression. [score:3]
Auxin action, mediated by ARF5/MP and ARF6/8, also promotes cambium development [4], [55], [56], and we propose that progression of vascular development which appears to follow a similar sequence of signaling events as floral organ maturation (Figure 7) [36], [57], is mediated by the miR159-miR167-miR319 network as well. [score:3]
A GUS reporter under control of the MIR167A promoter is expressed in anther procambium, sepal vasculature and ovaries; activity of the MIR167B promoter has been detected in ovaries and at the base of flower pedicels; and the MIR167C promoter is mainly active in stamen filaments and petals [1]. [score:3]
These results point to miR159 and miR319 as coordinating the expression pattern of MIR167 family members in petals, sepals and stamen. [score:3]
miR159- and miR319 -dependent expression of miR167 in inflorescences. [score:3]
It appears likely that the different MIRNA167 genes fine-tune ARF6/8 expression within different organs. [score:3]
This hypothesis was further supported by the finding that petal and stamen development as well as fertility in Pro35S:MIM159 and Pro35S:MIM319 flowers were substantially restored when we reduced miR167 activity with the Pro35S:MIM167 construct (Figure 3C, 3D). [score:2]
Petal and anther development are particularly sensitive to perturbations in the miR159-miR167-miR319 network. [score:2]
First, we have discovered that the miR159-MYB and miR319-TCP nodes can independently regulate the miR167-ARF node. [score:2]
miR167 -dependent regulation of ARF6/8 by miR159 and miR319. [score:2]
In addition, similarly to the LOX2 promoter in Pro35S:MIM319 flowers (Figure 2C), the MIR167A promoter was ectopically activated at the base of pedicels, in contrast to the repression of the MIR167B promoter in this region (Figure 5A and Figure S4A, S4C). [score:1]
Increased miR167 levels or reduced ARF6/8 function both result in underdeveloped floral organs and impaired male and female fertility [1]– [4]. [score:1]
To better understand miR159- and miR319 -dependent regulation of MIR167 genes, we assayed the transcriptional activity of MIR167A, MIR167B and MIR167C in Pro35S:MIM159 and Pro35S:MIM319 plants. [score:1]
1003374.g005 Figure 5(A) Promoter activity of MIR167 family members. [score:1]
ARF6/8 activity is also sufficient for driving growth of floral organs, as shown with plants in which miR167 function is blocked [1], [5]. [score:1]
Figure S4Effect of miR159, miR167 and miR319 on MIR167A promoter activity, and comparison of MIR167A and MIR319B promoter activities. [score:1]
Effects of miR159, miR167, and miR319 on flower morphology. [score:1]
Taken together, the phenotypic and physiological resemblance of plants with a reduction in ARF6/8 or miR159/miR319 activities supports links between miR167, miR159 and miR319 in growth and hormone -dependent maturation of sepals, petals and anthers. [score:1]
Floral defects caused by altered miR159, miR167, and miR319 activities. [score:1]
The miR159-miR167-miR319 circuit acts in sepals, petals and anthers to modulate the activity of ARF6/8, which control a large number of floral genes [4]. [score:1]
Mediation of miR159 and miR319 effects by miR167. [score:1]
These results placed miR159 and miR319 upstream of miR167. [score:1]
Moreover, the interactions can be complex, with miR319 contributing to activation of MIR167B and repression of MIR167A at the base of pedicels. [score:1]
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3
[+] score: 55
Expression Changes of Drought Associated miRNAs Target Genes under PEG8000 Stress and NaHS Treatment in Arabidopsis We selected ARF8 (target gene of miR167); TIR1, AFB2 and AFB3 (target genes of miR393); GRF1, GRF2 and GRF3 (target genes of miR396); CSD1 and CSD2 (target genes of miR398) to determine possible transcriptional changes of drought -associated miRNA target genes. [score:15]
We selected ARF8 (target gene of miR167); TIR1, AFB2 and AFB3 (target genes of miR393); GRF1, GRF2 and GRF3 (target genes of miR396); CSD1 and CSD2 (target genes of miR398) to determine possible transcriptional changes of drought -associated miRNA target genes. [score:11]
Under drought stress, miR167, miR393 and miR396 are upregulated, miR169 is downregulated and miR398 is differentially regulated [17]. [score:8]
On the other hand, H [2]S is involved in regulating the expression of drought associated miRNAs such as miR167, miR393, miR396 and miR398 and can therefore affect their target gene expressions and so to improve the tolerance of Arabidopsis to drought. [score:8]
According to Goetz et al. [19], ARF8 (target of miR167) prompts the elongation of hypocotyl and stamens during development, and regulates light signal transduction pathways. [score:5]
Jay et al. reported that miR167 targets auxin response factor 8 (ARF8) [18], which is involved in determining hypocotyl length, stamen development, and light signal transduction pathways [19]. [score:4]
While miR167 is responsible for hypocotyl growth, other factors such as the activation of α- and β-amylases [29], [31], and Arabidopsis AP2/DREB-type transcription factor [32] may suppress growth and cause an overall effect of decreased hypocotyl length. [score:3]
In Arabidopsis, miR156, miR158, miR159, miR165, miR167, miR168, miR169, miR171, miR319, miR393, miR394 and miR396 are drought-responsive. [score:1]
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4
[+] score: 27
From these results, a conclusion was drawn that in response to N deficiency, plants may enhance their root systems by inducing expression of miR160 and decreasing those of miR167 and miR171 (Figure 5C). [score:3]
Differential expression was also observed among members of the miR167, miR171, miR172, and miR319 families (Table S2). [score:3]
Our results suggested that changes in the expression levels of miR160, miR167, and miR171 may be important for the enhancement of plant root system under nitrogen deficiency. [score:3]
As expected, the inhibition of ARF8 by miR167 was relieved (Figure 5B), which could promote lateral root outgrowth. [score:3]
In addition to the plasticity of lateral roots, miR160 and miR167 also play crucial roles in adventitious root development [44]. [score:2]
miR160, miR167, and miR171 are involved in the signaling pathways triggering root system development. [score:2]
For example, when Arabidopsis was subjected to nitrate treatment, miR167 and miR393 were induced to modulate root development [41], [42]. [score:2]
miR160, miR167, and miR171 are involved in development of root system under N starvation coditions. [score:2]
miR160 facilitates adventitious root outgrowth via repressing ARF17, whereas miR167 negatively regulates adventitious root initiation via cleavage of ARF6 and ARF8. [score:2]
miR167 takes part in the plasticity of roots by mediating the regulation of ARF8 in response to N treatment [41]. [score:2]
Therefore, both the increased miR160 and decreased miR167 favor root growth under N-starvation conditions. [score:1]
Recently, several miRNAs were identified to be responsive to N limitation in Arabidopsis, which includes miR156, miR167, miR169, and miR398 [13], [17]. [score:1]
The sequencing data showed that miR167 was repressed under N -deficient conditions. [score:1]
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5
[+] score: 24
Unlike some miRNAs, such as miR160, miR167 and miR393, which directly target and regulate the expression of key components of the auxin response pathway, the miR165/166 targets themselves are not major components of hormone response pathways but they regulate the transcription of important components of hormone pathways. [score:10]
ARF6 and ARF8 are targeted and negatively regulated by miR167 [45, 46]. [score:4]
Expression of a miR167-resistant ARF6 or ARF8 gene results in ovule and anther development defects [47]. [score:4]
miR167 could also target IAA-Ala Resistant3 (IAR3), which converts an inactive form of auxin to bioactive auxin [48]. [score:3]
Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 expression, and regulates both female and male reproduction. [score:3]
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6
[+] score: 23
Among these targets, it can be mentioned members of the SOD family (targets of miR398), ARF8 an auxin response factor (target of miR167), DCL1 (target of miR162), AGO1 (target of miR168) and AGO2 (target of miR403). [score:13]
For instance, misregulation of ARF8, the gene target of miR167, could be one of the factors influencing developmental aberrations and disease symptoms by TuMV [50]. [score:7]
Among the 30 miRNA families detected at 2dpi, 10 (miR160, miR161, miR167, miR171, miR172, miR390, miR394, miR396, miR398 and miR408) displayed contrasting expression levels between viruses. [score:3]
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7
[+] score: 20
10 conserved miRNA families had highly increased expression (log [2]fold > 2) in response to Xam infection (Figure 2a), including miR160 and miR167 families which are both known to target auxin response factors (ARFs) [13] and miR393 and miR390 families which are also known to regulate auxin signaling [13]. [score:6]
Predicted targets for miR160 in cassava were ARF-like genes whereas predicted targets for miR167 included phosphatases and peptidases. [score:5]
Four families (miR167, miR397, miR894 and Cass_miRJ) had among their possible targets genes involved in starch biosynthesis or metabolism, as identified by similarity with genes in the KEGG pathway (map00500), which could be important focus points for biotechnological strategies aiming at bioethanol production. [score:3]
The repertoire of known bacterial-responsive miRNAs has increased and includes several families known to regulate hormone signaling, such as miR160, miR167 and miR390 involved in auxin signaling, miR159 involved in ABA signaling and miR319 involved in jasmonic acid signaling [13- 15]. [score:2]
miRNAs induction was found to be involved in regulating auxin signaling: miR160, miR167, miR390 and miR393 [11, 13]. [score:2]
It has been found that ARF binding sites are over-represented in auxin-related miRNA families like miR160 and miR167, thus forming a regulatory loop [40]. [score:2]
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8
[+] score: 20
Other miRNAs from this paper: ath-MIR156a, ath-MIR156b, ath-MIR156c, ath-MIR156d, ath-MIR156e, ath-MIR156f, ath-MIR157d, ath-MIR158a, ath-MIR159a, ath-MIR160a, ath-MIR160b, ath-MIR160c, ath-MIR161, ath-MIR162a, ath-MIR162b, ath-MIR163, ath-MIR164a, ath-MIR164b, ath-MIR165a, ath-MIR165b, ath-MIR166a, ath-MIR166b, ath-MIR166c, ath-MIR166d, ath-MIR166e, ath-MIR166f, ath-MIR166g, ath-MIR167a, ath-MIR169a, ath-MIR170, ath-MIR172a, ath-MIR172b, ath-MIR173, ath-MIR159b, ath-MIR319a, ath-MIR319b, ath-MIR167d, ath-MIR169b, ath-MIR169c, ath-MIR169d, ath-MIR169e, ath-MIR169f, ath-MIR169g, ath-MIR169h, ath-MIR169i, ath-MIR169j, ath-MIR169k, ath-MIR169l, ath-MIR169m, ath-MIR169n, ath-MIR171b, ath-MIR172c, ath-MIR172d, ath-MIR391, ath-MIR395a, ath-MIR395b, ath-MIR395c, ath-MIR395d, ath-MIR395e, ath-MIR395f, ath-MIR397a, ath-MIR397b, ath-MIR398a, ath-MIR398b, ath-MIR398c, ath-MIR399a, ath-MIR399b, ath-MIR399c, ath-MIR399d, ath-MIR399e, ath-MIR399f, ath-MIR400, ath-MIR408, ath-MIR156g, ath-MIR156h, ath-MIR158b, ath-MIR159c, ath-MIR319c, ath-MIR164c, ath-MIR167c, ath-MIR172e, ath-MIR447a, ath-MIR447b, ath-MIR447c, ath-MIR773a, ath-MIR775, ath-MIR822, ath-MIR823, ath-MIR826a, ath-MIR827, ath-MIR829, ath-MIR833a, ath-MIR837, ath-MIR841a, ath-MIR842, ath-MIR843, ath-MIR845a, ath-MIR848, ath-MIR852, ath-MIR824, ath-MIR854a, ath-MIR854b, ath-MIR854c, ath-MIR854d, ath-MIR857, ath-MIR864, ath-MIR2111a, ath-MIR2111b, ath-MIR773b, ath-MIR841b, ath-MIR854e, ath-MIR833b, ath-MIR156i, ath-MIR156j, ath-MIR826b
In contrast, the targets of miR160, ARF10 and ARF16, were repressed, whereas the target of miR167, ARF8, was induced by –C, –N, and –S (Fig. 3F,I). [score:5]
Nitrogen treatment led to a reduction in miR167 and the elevation of its target, ARF8, which mediates the balance between lateral root initiation and emergence 58. miR160 controls root cap formation, lateral root number and primary root length by mediating the cleavage of its targets, ARF10 and ARF16 40. [score:5]
Both sequencing data and quantitative RT-PCR results indicated that miR160 was induced, whereas miR167 was suppressed, by –C, –N, and –S, implying that under nutrient deficiency conditions, or at least under –C, –N, and –S conditions, plants regulate root development -associated miRNAs to modulate their root systems. [score:5]
miR160 and miR167 are involved in the auxin pathway by targeting ARF genes. [score:3]
In all four libraries, the miR156 family was the most abundant, followed by the miR167 and miR166 families. [score:1]
In contrast, among the remaining three repressed miRNA families, miR167 and miR172 participate in the auxin response 37 and the juvenile-to-adult transition 38, respectively, and the function of miR841 is unknown. [score:1]
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9
[+] score: 16
Other miRNAs from this paper: ath-MIR156a, ath-MIR156b, ath-MIR156c, ath-MIR156d, ath-MIR156e, ath-MIR156f, ath-MIR159a, ath-MIR160a, ath-MIR160b, ath-MIR160c, ath-MIR164a, ath-MIR164b, ath-MIR166a, ath-MIR166b, ath-MIR166c, ath-MIR166d, ath-MIR166e, ath-MIR166f, ath-MIR166g, ath-MIR167a, ath-MIR168a, ath-MIR168b, ath-MIR171a, ath-MIR172a, ath-MIR172b, ath-MIR159b, ath-MIR319a, osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR164a, osa-MIR164b, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR171a, ath-MIR167d, ath-MIR172c, ath-MIR172d, ath-MIR393a, ath-MIR393b, ath-MIR396a, ath-MIR396b, ath-MIR398a, osa-MIR393a, osa-MIR396a, osa-MIR396b, osa-MIR396c, osa-MIR398a, ath-MIR156g, ath-MIR156h, ath-MIR159c, ath-MIR164c, ath-MIR167c, ath-MIR172e, osa-MIR156k, osa-MIR156l, osa-MIR159a, osa-MIR159b, osa-MIR159c, osa-MIR159d, osa-MIR159e, osa-MIR159f, osa-MIR319a, osa-MIR160e, osa-MIR160f, osa-MIR164c, osa-MIR166k, osa-MIR166l, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR168a, osa-MIR168b, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR393b, osa-MIR172d, osa-MIR167j, osa-MIR166m, osa-MIR166j, osa-MIR437, osa-MIR396e, osa-MIR444a, osa-MIR528, osa-MIR531a, osa-MIR1425, osa-MIR444b, osa-MIR444c, osa-MIR444d, osa-MIR444e, osa-MIR444f, osa-MIR531b, osa-MIR1862a, osa-MIR1862b, osa-MIR1862c, osa-MIR1873, osa-MIR1862d, osa-MIR1862e, osa-MIR396f, osa-MIR396g, osa-MIR396h, osa-MIR396d, osa-MIR1862f, osa-MIR1862g, ath-MIR5021, osa-MIR5072, osa-MIR5077, ath-MIR156i, ath-MIR156j, osa-MIR531c
Down-regulation of ARF6 and ARF8 by miR167 in tomato, leads to affects the floral development and female sterility [61]. [score:5]
Moreover, we found that in A. thaliana ARF6 and ARF8 were targeted by miR167 and ARF10, ARF16, and ARF17 by miR160 and in O. sativa ARF16 by miR160; ARF6, ARF8 were targeted by miR167. [score:5]
In C. borivilianum ARF18 and ARF17 were found to be targeted by miR160; and ARF12 by miR167. [score:3]
Out of all, on the basis of bioinformatic analysis maximum expression was observed for miR159 family i. e. 315,441 reads followed by miR166 and miR167 family with 56,445 and 25,592 reads respectively and 17 miRNA families were reported to have less than 10 reads. [score:3]
[1 to 20 of 4 sentences]
10
[+] score: 13
Target prediction of maize miRNAs found that miR167, as in Arabidopsis, targets ARFs (Zhang et al., 2009a). [score:5]
IAA-Ala Resistant3, an evolutionarily conserved target of miR167, mediates Arabidopsis root architecture changes during high osmotic stress. [score:3]
Regarding the control exerted by miRNAs on phytohormones, it has been shown in Arabidopsis that auxin metabolism is controlled by at least four conserved miRNA families (miR160, miR167, miR390, and miR393), which mainly exert control by regulating ARF proteins (i. e., ARF6, ARF8, ARF10, ARF16, and 17) (Rhoades et al., 2002; Mallory et al., 2005; Marin et al., 2010; Win dels and Vazquez, 2011; Kinoshita et al., 2012). [score:2]
Specifically, the regulation of TIR1 and potentially three ARFs by the miR393 and miR167 families resulted conserved. [score:2]
Most miR167 and miR319 families were found enriched in seeds rather than leaves (Kang et al., 2012). [score:1]
[1 to 20 of 5 sentences]
11
[+] score: 12
In addition to the miR393 -mediated regulation of auxin receptors, the expression of several Auxin Response Factors (ARFs) is known to be regulated by different miRNAs in plants (Khraiwesh et al. 2012; Liu et al. 2014) Among them are miR160 (targeting ARF10, ARF16 and ARF17) and miR167 (targeting ARF6 and ARF8) (Rhoades et al. 2002). [score:9]
While auxin signalling pathway is regulated by miR160, miR167, miR390 and miR393, the JA biosynthetic pathway is under the control of miR319 and miR159, and miR159 regulate the ABA signalling pathway (Curaba et al. 2014). [score:3]
[1 to 20 of 2 sentences]
12
[+] score: 11
Given the presence of miRs targeting transcription factor families such as SPL (miR156/miR157), MYB/TCP (miR159, miR319), ARF (miR160, miR167), AP2 (miR172), and GRF (miR396) there can be no doubt that miRs modulate the expression of many transcription factors during later stages of pollen development. [score:6]
The remaining microRNAs target genes involved in hormone response like AUXIN-RESPONSE FACTORs (miR160 and miR167, 5 reads), genes involved in general metabolism or those having no identified targets. [score:5]
[1 to 20 of 2 sentences]
13
[+] score: 10
In addition, the sequencing results also revealed that various other stress-regulated miRNAs were expressed in response to LPS which include: miR161, miR165, miR166, miR167, miR168 miR401, miR403, miR405 and miR5635. [score:4]
The most differentially expressed miRNA with a highest fold change in the callus tissue was miR156 and in leaf tissue, miR167. [score:3]
Experimental studies in Arabidopsis and other plants have shown that abiotic and biotic stresses induce differential expression of a set of miRNAs such as: miR156, miR159, miR165, miR167, miR168, miR169, miR319, miR393, miR395, miR396, miR398, miR399, and miR402 [7, 18- 23]. [score:3]
[1 to 20 of 3 sentences]
14
[+] score: 10
While the expressions of 14 families (miR156/miR157, miR158, miR160, miR162, miR165/miR166, miR168, miR169, miR171, miR390, miR393, miR394, miR396, miR398, and miR399) were dramatically reduced, 3 families (miR159, miR167, and miR172) were up-regulated in CsCl -treated seedlings. [score:6]
In response to nitrogen concentration, miR167 and miR393 involve in the regulation of root development and growth [20, 21]. [score:3]
miR167, miR168, miR172, miR396, and miR398) were notably increased (Fig 3B, S2 Fig). [score:1]
[1 to 20 of 3 sentences]
15
[+] score: 10
A small portion of the network is shown in Figure 8. According to the results, 4 miRNAs from ath-miR167 family and 18 miRNA-target interactions were screened. [score:3]
This partial network consists of 4 miRNAs from ath-miR167 family and 18 miRNA-target interactions. [score:3]
0103181.g008 Figure 8 This partial network consists of 4 miRNAs from ath-miR167 family and 18 miRNA-target interactions. [score:3]
All these results are high quality interactions to ath-miR167 family gained by our integrated approach. [score:1]
[1 to 20 of 4 sentences]
16
[+] score: 9
This is consistent with what has been observed in plants that express a non-targetable form of the miR167 target ARF6 or ARF8. [score:7]
Effects on flowering time have not been previously associated with miR167 [17], [50], and the late-flowering phenotype of MIM167 plants reveals a new role for this miRNA family. [score:1]
PHV, PHB, REV, ATHB-8, ATHB-15 1, 2, 3 MIM167 miR167 Delayed flowering. [score:1]
[1 to 20 of 3 sentences]
17
[+] score: 8
For example, in A. thaliana the expression pattern of both 6 and 8 (involved in female and male reproductive organ development) is controlled by miR167, with miRNA160 also involved in the control of expression in P. patens and A. thaliana as well as in S. moellendorffii, suggesting a conserved mechanism of post-transcriptional regulation [52, 54]. [score:7]
Regulation ofs by miRNA in A. thaliana can be considered as auxin-independent because auxin treatment does not alter appreciably miR160, miR164, and miR167 accumulation, at least in seedlings [49]. [score:1]
[1 to 20 of 2 sentences]
18
[+] score: 8
miR167 is down-regulated by nitrate treatments in pericycle cells and this leads to an induction of its target, the auxin response factor ARF8 [44]. [score:6]
Regulation of ARF8 by miR167 causes a change in the ratio of initiating and emerging lateral roots in response to nitrate [44]. [score:2]
[1 to 20 of 2 sentences]
19
[+] score: 8
Other miRNAs from this paper: ath-MIR156a, ath-MIR156b, ath-MIR156c, ath-MIR156d, ath-MIR156e, ath-MIR156f, ath-MIR159a, ath-MIR160a, ath-MIR160b, ath-MIR160c, ath-MIR162a, ath-MIR162b, ath-MIR164a, ath-MIR164b, ath-MIR166a, ath-MIR166b, ath-MIR166c, ath-MIR166d, ath-MIR166e, ath-MIR166f, ath-MIR166g, ath-MIR167a, ath-MIR168a, ath-MIR168b, ath-MIR169a, ath-MIR172a, ath-MIR172b, ath-MIR159b, osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR162a, osa-MIR164a, osa-MIR164b, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, ath-MIR167d, ath-MIR169b, ath-MIR169c, ath-MIR169d, ath-MIR169e, ath-MIR169f, ath-MIR169g, ath-MIR169h, ath-MIR169i, ath-MIR169j, ath-MIR169k, ath-MIR169l, ath-MIR169m, ath-MIR169n, ath-MIR172c, ath-MIR172d, ath-MIR395a, ath-MIR395b, ath-MIR395c, ath-MIR395d, ath-MIR395e, ath-MIR395f, ath-MIR396a, ath-MIR396b, ath-MIR399a, ath-MIR399b, ath-MIR399c, ath-MIR399d, ath-MIR399e, ath-MIR399f, osa-MIR395b, osa-MIR395d, osa-MIR395e, osa-MIR395g, osa-MIR395h, osa-MIR395i, osa-MIR395j, osa-MIR395k, osa-MIR395l, osa-MIR395s, osa-MIR395t, osa-MIR395c, osa-MIR395a, osa-MIR395f, osa-MIR395u, osa-MIR396a, osa-MIR396b, osa-MIR396c, osa-MIR399a, osa-MIR399b, osa-MIR399c, osa-MIR399d, osa-MIR399e, osa-MIR399f, osa-MIR399g, osa-MIR399h, osa-MIR399i, osa-MIR399j, osa-MIR399k, ath-MIR408, ath-MIR156g, ath-MIR156h, ath-MIR159c, ath-MIR164c, ath-MIR167c, ath-MIR172e, osa-MIR156k, osa-MIR156l, osa-MIR159a, osa-MIR159b, osa-MIR159c, osa-MIR159d, osa-MIR159e, osa-MIR159f, osa-MIR160e, osa-MIR160f, osa-MIR162b, osa-MIR164c, osa-MIR164d, osa-MIR164e, osa-MIR166k, osa-MIR166l, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR168a, osa-MIR168b, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR171h, osa-MIR408, osa-MIR172d, osa-MIR167j, osa-MIR166m, osa-MIR166j, osa-MIR164f, zma-MIR156d, zma-MIR156f, zma-MIR156g, zma-MIR156b, zma-MIR156c, zma-MIR156e, zma-MIR156a, zma-MIR156h, zma-MIR156i, zma-MIR160a, zma-MIR160c, zma-MIR160d, zma-MIR160b, zma-MIR164a, zma-MIR164d, zma-MIR164b, zma-MIR164c, zma-MIR169a, zma-MIR169b, zma-MIR167a, zma-MIR167b, zma-MIR167d, zma-MIR167c, zma-MIR160e, zma-MIR166a, zma-MIR162, zma-MIR166h, zma-MIR166e, zma-MIR166i, zma-MIR166f, zma-MIR166g, zma-MIR166b, zma-MIR166c, zma-MIR166d, zma-MIR172a, zma-MIR172d, zma-MIR172b, zma-MIR172c, osa-MIR396e, zma-MIR395b, zma-MIR395c, zma-MIR395a, zma-MIR396b, zma-MIR396a, zma-MIR399a, zma-MIR399c, zma-MIR399b, zma-MIR399d, zma-MIR399e, zma-MIR399f, zma-MIR156j, zma-MIR159a, zma-MIR159b, zma-MIR159c, zma-MIR159d, zma-MIR166k, zma-MIR166j, zma-MIR167e, zma-MIR167f, zma-MIR167g, zma-MIR167h, zma-MIR167i, zma-MIR168a, zma-MIR168b, zma-MIR169c, zma-MIR169f, zma-MIR169g, zma-MIR169h, zma-MIR169i, zma-MIR169k, zma-MIR169j, zma-MIR169d, zma-MIR169e, zma-MIR172e, zma-MIR166l, zma-MIR166m, zma-MIR171h, zma-MIR408a, zma-MIR156k, zma-MIR160f, osa-MIR529a, osa-MIR395m, osa-MIR395n, osa-MIR395o, osa-MIR395p, osa-MIR395q, osa-MIR395v, osa-MIR395w, osa-MIR395r, osa-MIR529b, osa-MIR169r, osa-MIR396f, zma-MIR396c, zma-MIR396d, osa-MIR2118a, osa-MIR2118b, osa-MIR2118c, osa-MIR2118d, osa-MIR2118e, osa-MIR2118f, osa-MIR2118g, osa-MIR2118h, osa-MIR2118i, osa-MIR2118j, osa-MIR2118k, osa-MIR2118l, osa-MIR2118m, osa-MIR2118n, osa-MIR2118o, osa-MIR2118p, osa-MIR2118q, osa-MIR2118r, osa-MIR2275a, osa-MIR2275b, zma-MIR2118a, zma-MIR2118b, zma-MIR2118c, zma-MIR2118d, zma-MIR2118e, zma-MIR2118f, zma-MIR2118g, zma-MIR2275a, zma-MIR2275b, zma-MIR2275c, zma-MIR2275d, osa-MIR396g, osa-MIR396h, osa-MIR396d, zma-MIR156l, zma-MIR159e, zma-MIR159f, zma-MIR159g, zma-MIR159h, zma-MIR159i, zma-MIR159j, zma-MIR159k, zma-MIR160g, zma-MIR164e, zma-MIR164f, zma-MIR164g, zma-MIR164h, zma-MIR166n, zma-MIR167j, zma-MIR169l, zma-MIR169m, zma-MIR169n, zma-MIR169o, zma-MIR169p, zma-MIR169q, zma-MIR169r, zma-MIR395d, zma-MIR395e, zma-MIR395f, zma-MIR395g, zma-MIR395h, zma-MIR395i, zma-MIR395j, zma-MIR395k, zma-MIR395l, zma-MIR395m, zma-MIR395n, zma-MIR395o, zma-MIR395p, zma-MIR396e, zma-MIR396f, zma-MIR396g, zma-MIR396h, zma-MIR399g, zma-MIR399h, zma-MIR399i, zma-MIR399j, zma-MIR408b, zma-MIR529, osa-MIR395x, osa-MIR395y, osa-MIR2275c, osa-MIR2275d, ath-MIR156i, ath-MIR156j
For example, miR167 targets four AUXIN RESPONSE FACTOR (ARF) genes, and miR160 targets six ARF genes. [score:5]
The six most abundantly expressed miRNA families were miR166, miR168, miR167, miR156, miR159, and miRs6. [score:3]
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20
[+] score: 7
miR167 was proved to be up-regulated in Chinese white poplar (Chen et al., 2012), wheat (Kumar et al., 2014) and barley (Kruszka et al., 2014) but down-regulated in rice (Sailaja et al., 2014). [score:7]
[1 to 20 of 1 sentences]
21
[+] score: 6
Other miRNAs from this paper: ath-MIR156a, ath-MIR156b, ath-MIR156c, ath-MIR156d, ath-MIR156e, ath-MIR156f, ath-MIR157a, ath-MIR157b, ath-MIR157c, ath-MIR157d, ath-MIR159a, ath-MIR160a, ath-MIR160b, ath-MIR160c, ath-MIR165a, ath-MIR165b, ath-MIR166a, ath-MIR166b, ath-MIR166c, ath-MIR166d, ath-MIR166e, ath-MIR166f, ath-MIR166g, ath-MIR167a, ath-MIR169a, ath-MIR172a, ath-MIR172b, ath-MIR159b, ath-MIR319a, ath-MIR319b, osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, ath-MIR167d, ath-MIR169b, ath-MIR169c, ath-MIR169d, ath-MIR169e, ath-MIR169f, ath-MIR169g, ath-MIR169h, ath-MIR169i, ath-MIR169j, ath-MIR169k, ath-MIR169l, ath-MIR169m, ath-MIR169n, ath-MIR172c, ath-MIR172d, ath-MIR394a, ath-MIR394b, ath-MIR396a, ath-MIR396b, osa-MIR394, osa-MIR396a, osa-MIR396b, osa-MIR396c, ath-MIR403, ath-MIR408, ath-MIR156g, ath-MIR156h, ath-MIR159c, ath-MIR319c, ath-MIR167c, ath-MIR172e, osa-MIR156k, osa-MIR156l, osa-MIR159a, osa-MIR159b, osa-MIR159c, osa-MIR159d, osa-MIR159e, osa-MIR159f, osa-MIR319a, osa-MIR319b, osa-MIR160e, osa-MIR160f, osa-MIR166k, osa-MIR166l, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR408, osa-MIR172d, osa-MIR167j, osa-MIR166m, osa-MIR166j, ath-MIR414, osa-MIR414, osa-MIR396e, ath-MIR856, ath-MIR858a, osa-MIR169r, osa-MIR396f, ath-MIR2111a, ath-MIR2111b, osa-MIR396g, osa-MIR396h, osa-MIR396d, ath-MIR858b, ath-MIR156i, ath-MIR156j
Further targets were predicted for certain more conserved miRNAs including miR166, miR167, miR319, miR 396 and miR408, miR856 and miR1310 (Additional file 2 Table S1). [score:3]
This was also the case for some other miRNA families, such as miR156 (from 3 read to 124 reads) miR167 (from 13 reads to 9,637 reads) and miR394 (from 2 reads to 1,554 reads). [score:1]
miR156, miR159, miR167, miR319, miR396 and miR172 possessed 5, 8, 10, 8, 7 and 6 members respectively whereas other miRNA families such as miR157, miR160, miR169, miR858, miR894, miR2111 etc. [score:1]
In addition, miR167 and miR394 were found to have some thousands to tens of thousands of redundancies while miR319, miR166 and miR156 had more than one hundred redundancies. [score:1]
[1 to 20 of 4 sentences]
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[+] score: 6
Besides miR393, two other miRNA families, miR160 and miR167, are upregulated following PsDC3000 inoculation and target members of auxin-response factors (ARF) [14]. [score:6]
[1 to 20 of 1 sentences]
23
[+] score: 4
Besides miR393, two other miRNA families, miR160 and miR167, are upregulated following Pseudomonas syringae pv. [score:4]
[1 to 20 of 1 sentences]
24
[+] score: 4
miR160 and miR167 each target mRNAs encoding members of the ARF family of transcription factors [19]. [score:3]
Two additional miRNA families, miR160 and miR167, were significantly elevated at 3 hr p. i. by 5-fold and 6-fold, respectively (Figure 3C). [score:1]
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25
[+] score: 3
Other miRNAs from this paper: ath-MIR167a, ath-MIR167d, ath-MIR167c
IAA-Ala Resistant3, an evolutionarily conserved target of miR167, mediates Arabidopsis root architecture changes during high osmotic stress. [score:3]
[1 to 20 of 1 sentences]
26
[+] score: 3
The involvement of miRNAs as key regulators of flowering time (miR159, miR172, miR156, and miR171), hormone signaling (miR159, miR160, miR167, miR164, and miR393), or shoot and root development (miR164), was reviewed by (Wang and Li, 2007). [score:3]
[1 to 20 of 1 sentences]
27
[+] score: 3
Other miRNAs from this paper: ath-MIR167a, ath-MIR167d, ath-MIR167c
Probes were either an LNA modified PAI1 exon 5 sense 35-mer (Exiqon) or an miR167 antisense 21-mer (Table S1). [score:1]
The lack of residual PAI sRNAs in dcl2 dcl3 dcl4 indicates a minimal contribution of DCL1 to generating these species, although DCL1 is functional in processing microRNAs such as miR167. [score:1]
A replicate blot was probed with a 21 nt oligonucleotide antisense to miR167 (middle panel). [score:1]
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28
[+] score: 3
Other miRNAs from this paper: ath-MIR167a, ath-MIR167d, ath-MIR390a, ath-MIR390b, ath-MIR167c
The complementation of the hen1 mutation was verified by the rescue of miR167 and flower development phenotypes (Figure S4). [score:3]
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29
[+] score: 3
miRNA -mediated signaling is also involved in the development of various tissues; several miRNA families such as miR160, miR164, miR167, and miR390 have been demonstrated to be involved in root cap formation and lateral root development [42]. [score:3]
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[+] score: 3
Another miRNA family MIR167 targeting genes encoding Auxin response factor (ARF) has six members (MIR167a to MIR167f) in E. salsugineum but four members (MIRR167a to MIR167d) in A. thaliana (Rhoades et al., 2002). [score:3]
[1 to 20 of 1 sentences]
31
[+] score: 2
Diurnal oscillation in the accumulation of Arabidopsis, miR167 miR168 miR171 and miR398. [score:1]
miR171, miR398, miR168, and miR167 oscillate diurnally but are not under clock-control (Sire et al., 2009). [score:1]
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[+] score: 2
Moreover, the balance between repressing (ARF17) and activating (ARF6 and ARF8) factors is post-transcriptionally regulated by miR160 and miR167 (Gutierrez et al., 2009). [score:2]
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[+] score: 2
In addition, most of the petiole-specific miRNAs were members of the conserved miRNA families miR164 and miR167, although there was one novel miRNA (bra-miR6104). [score:1]
Both the miR164 and miR167 families were identified as stem-specific miRNAs from A. thaliana and tobacco [50, 51]. [score:1]
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Similarly, miRNAs responsive to bacterial (miR160, miR167, miR393, miR396, miR398 and miR825) and viral infections (miR156 and miR164) were not altered in the OE lines [33- 35]. [score:1]
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We show miRNAs that have the most (miR167; A) and the second most abundant (miR169; B) substitutions. [score:1]
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Among them, miR167 was induced by both high salinity and drought, and miR167c was gradually increased from 2 to 24 h after exposure to high-salinity treatment. [score:1]
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One group of miRNAs (miR160, miR167, miR390, miR393) is specifically related to auxin signalling (Zhang et al., 2011), which is linked to camalexin and glucosinolate biosynthesis. [score:1]
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Diurnal oscillation in the accumulation of Arabidopsis microRNAs, miR167, miR168, miR171 and miR398. [score:1]
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Among these families, the miR156 family had the most family members (13), with 93.7% of all conserved miRNA reads, followed by miR166 (6), miR168 (5), miR167 (4), miR397 (4), miR390 (3), and miR399 (3) etc. [score:1]
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Other miRNAs from this paper: ath-MIR156a, ath-MIR156b, ath-MIR156c, ath-MIR156d, ath-MIR156e, ath-MIR156f, ath-MIR159a, ath-MIR160a, ath-MIR160b, ath-MIR160c, ath-MIR162a, ath-MIR162b, ath-MIR164a, ath-MIR164b, ath-MIR166a, ath-MIR166b, ath-MIR166c, ath-MIR166d, ath-MIR166e, ath-MIR166f, ath-MIR166g, ath-MIR167a, ath-MIR169a, ath-MIR171a, ath-MIR172a, ath-MIR172b, ath-MIR159b, osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR162a, osa-MIR164a, osa-MIR164b, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR171a, ath-MIR167d, ath-MIR169b, ath-MIR169c, ath-MIR169d, ath-MIR169e, ath-MIR169f, ath-MIR169g, ath-MIR169h, ath-MIR169i, ath-MIR169j, ath-MIR169k, ath-MIR169l, ath-MIR169m, ath-MIR169n, ath-MIR171b, ath-MIR171c, ath-MIR172c, ath-MIR172d, ath-MIR393a, ath-MIR393b, ath-MIR394a, ath-MIR394b, ath-MIR395a, ath-MIR395b, ath-MIR395c, ath-MIR395d, ath-MIR395e, ath-MIR395f, osa-MIR393a, osa-MIR394, osa-MIR395b, osa-MIR395d, osa-MIR395e, osa-MIR395g, osa-MIR395h, osa-MIR395i, osa-MIR395j, osa-MIR395k, osa-MIR395l, osa-MIR395s, osa-MIR395t, osa-MIR395c, osa-MIR395a, osa-MIR395f, osa-MIR395u, ath-MIR156g, ath-MIR156h, ath-MIR159c, ath-MIR164c, ath-MIR167c, ath-MIR172e, osa-MIR156k, osa-MIR156l, osa-MIR159a, osa-MIR159b, osa-MIR159c, osa-MIR159d, osa-MIR159e, osa-MIR159f, osa-MIR160e, osa-MIR160f, osa-MIR162b, osa-MIR164c, osa-MIR164d, osa-MIR164e, osa-MIR166k, osa-MIR166l, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR171b, osa-MIR171c, osa-MIR171d, osa-MIR171e, osa-MIR171f, osa-MIR171g, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR171h, osa-MIR393b, osa-MIR172d, osa-MIR171i, osa-MIR167j, osa-MIR166m, osa-MIR166j, osa-MIR164f, zma-MIR156d, zma-MIR156f, zma-MIR156g, zma-MIR156b, zma-MIR156c, zma-MIR156e, zma-MIR156a, zma-MIR156h, zma-MIR156i, zma-MIR160a, zma-MIR160c, zma-MIR160d, zma-MIR160b, zma-MIR164a, zma-MIR164d, zma-MIR164b, zma-MIR164c, zma-MIR169a, zma-MIR169b, zma-MIR167a, zma-MIR167b, zma-MIR167d, zma-MIR167c, zma-MIR160e, zma-MIR166a, zma-MIR162, zma-MIR166h, zma-MIR166e, zma-MIR166i, zma-MIR166f, zma-MIR166g, zma-MIR166b, zma-MIR166c, zma-MIR166d, zma-MIR171a, zma-MIR171b, zma-MIR172a, zma-MIR172d, zma-MIR172b, zma-MIR172c, zma-MIR171d, zma-MIR171f, zma-MIR394a, zma-MIR394b, zma-MIR395b, zma-MIR395c, zma-MIR395a, zma-MIR156j, zma-MIR159a, zma-MIR159b, zma-MIR159c, zma-MIR159d, zma-MIR166k, zma-MIR166j, zma-MIR167e, zma-MIR167f, zma-MIR167g, zma-MIR167h, zma-MIR167i, zma-MIR169c, zma-MIR169f, zma-MIR169g, zma-MIR169h, zma-MIR169i, zma-MIR169k, zma-MIR169j, zma-MIR169d, zma-MIR169e, zma-MIR171c, zma-MIR171j, zma-MIR171e, zma-MIR171i, zma-MIR171g, zma-MIR172e, zma-MIR166l, zma-MIR166m, zma-MIR171k, zma-MIR171h, zma-MIR393a, zma-MIR156k, zma-MIR160f, osa-MIR528, osa-MIR529a, osa-MIR395m, osa-MIR395n, osa-MIR395o, osa-MIR395p, osa-MIR395q, osa-MIR395v, osa-MIR395w, osa-MIR395r, ath-MIR827, osa-MIR529b, osa-MIR1432, osa-MIR169r, osa-MIR827, osa-MIR2118a, osa-MIR2118b, osa-MIR2118c, osa-MIR2118d, osa-MIR2118e, osa-MIR2118f, osa-MIR2118g, osa-MIR2118h, osa-MIR2118i, osa-MIR2118j, osa-MIR2118k, osa-MIR2118l, osa-MIR2118m, osa-MIR2118n, osa-MIR2118o, osa-MIR2118p, osa-MIR2118q, osa-MIR2118r, osa-MIR2275a, osa-MIR2275b, zma-MIR2118a, zma-MIR2118b, zma-MIR2118c, zma-MIR2118d, zma-MIR2118e, zma-MIR2118f, zma-MIR2118g, zma-MIR2275a, zma-MIR2275b, zma-MIR2275c, zma-MIR2275d, zma-MIR156l, zma-MIR159e, zma-MIR159f, zma-MIR159g, zma-MIR159h, zma-MIR159i, zma-MIR159j, zma-MIR159k, zma-MIR160g, zma-MIR164e, zma-MIR164f, zma-MIR164g, zma-MIR164h, zma-MIR166n, zma-MIR167j, zma-MIR169l, zma-MIR169m, zma-MIR169n, zma-MIR169o, zma-MIR169p, zma-MIR169q, zma-MIR169r, zma-MIR171l, zma-MIR171m, zma-MIR171n, zma-MIR393b, zma-MIR393c, zma-MIR395d, zma-MIR395e, zma-MIR395f, zma-MIR395g, zma-MIR395h, zma-MIR395i, zma-MIR395j, zma-MIR395k, zma-MIR395l, zma-MIR395m, zma-MIR395n, zma-MIR395o, zma-MIR395p, zma-MIR482, zma-MIR528a, zma-MIR528b, zma-MIR529, zma-MIR827, zma-MIR1432, osa-MIR395x, osa-MIR395y, osa-MIR2275c, osa-MIR2275d, ath-MIR156i, ath-MIR156j
The largest miRNA family size identified was miR166 that consisted of 14 members and miR156, miR169 and miR167 possessed 12, 12 and 10 members, respectively; whereas other miRNA families such as miR162, miR529, miR827 and miR1432 had only one member detected in this period. [score:1]
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mir165 [97] HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15 mir166 [97] HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15 mir167 [93] ARF family members ARF6 and ARF8. [score:1]
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Eight cis-NATs were coincidently the precursors of miR162, miR167, miR171, miR172, miR398 and miR408 (Table  3). [score:1]
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Other miRNAs from this paper: ath-MIR167a, ath-MIR167d, ath-MIR167c
Gifford et al. (2008) have revealed that root amino acids control LR growth via an auxin response factor 8 (ARF8)/miR167 circuit. [score:1]
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