Stem-loop sequence hsa-mir-642a

Accession

MI0003657

Previous IDs

hsa-mir-642

Symbol

HGNC:MIR642

Description

Homo sapiens miR-642a stem-loop

Gene family

MIPF0000468; mir-642

Stem-loop

------------au             g                      ggu 
              cugaguugggagg ucccucuccaaaugugucuugg   g
              ||||||||||||| ||||||||||||||||||||||   g
              ggcucaacccucc agggagagguuuacacagaacu   g
uuacuaccgucucc             a                      agg 

Deep sequencing

117 reads, 21 experiments

Genome context

• Coordinates (GRCh37.p5): chr19: 46178186-46178282 [+]
• Overlapping transcripts:

  sense

  ENST00000304207 ; GIPR-202; intron 6

  ENST00000304207 ; GIPR-202; intron 6

  ENST00000304207 ; GIPR-202; intron 6

  ENST00000263281 ; GIPR-201; intron 7

  ENST00000263281 ; GIPR-201; intron 7

  ENST00000263281 ; GIPR-201; intron 7

Clustered miRNAs

< 10kb from hsa-mir-642a

• hsa-mir-642a: chr19: 46178186-46178282 [+]
• hsa-mir-642b: chr19: 46178190-46178266 [-]

Database links

• ENTREZGENE: 693227;MIR642A
• HGNC: 32898;MIR642

Mature sequence hsa-miR-642a-5p

• Accession: MIMAT0003312
• Previous IDs: hsa-miR-642;hsa-miR-642a
• Sequence: 16 - gucccucuccaaaugugucuug - 37
• Deep sequencing: 47 reads, 10 experiments
• Evidence: experimental; RT-PCR [1], SAGE [1], cloned [2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-642a-5p
  • MICRORNA.ORG:hsa-miR-642a-5p
  • MIRDB:hsa-miR-642a-5p
  • RNA22-HSA:hsa-miR-642a-5p
  • TARGETMINER:hsa-miR-642a-5p
  • TARGETSCAN-VERT:hsa-miR-642

Mature sequence hsa-miR-642a-3p

• Accession: MIMAT0020924
• Sequence: 51 - agacacauuuggagagggaacc - 72
• Deep sequencing: 70 reads, 11 experiments
• Evidence: experimental; SOLiD [3]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-642a-3p
  • MIRDB:hsa-miR-642a-3p
  • TARGETMINER:hsa-miR-642a-3p

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:21767385 "Small RNA sequencing reveals miR-642a-3p as a novel adipocyte-specific microRNA and miR-30 as a key regulator of human adipogenesis" Zaragosi LE, Wdziekonski B, Brigand KL, Villageois P, Mari B, Waldmann R, Dani C, Barbry P Genome Biol. 12:R64(2011).