Stem-loop sequence hsa-mir-3118-2

Accession

MI0014132

Description

Homo sapiens miR-3118-2 stem-loop

Gene family

MIPF0000837; mir-3118

Stem-loop

         u               a     caua 
acacuacaa aauuuucauaaugca ucaca    a
||||||||| ||||||||||||||| |||||    u
ugugauguu uuaaaaguauuacgu agugu    c
         c               c     auca 

Deep sequencing

9 reads, 3 experiments

Genome context

• Coordinates (GRCh37.p5): chr1: 143163750-143163822 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000037559 ; BX571672.1-001; intron 1

  OTTHUMT00000037560 ; BX571672.1-002; intron 1

  OTTHUMT00000037561 ; BX571672.1-003; intron 1

  OTTHUMT00000037562 ; BX571672.1-004; intron 1

  OTTHUMT00000037573 ; BX571672.4-001; intron 1

  OTTHUMT00000037559 ; BX571672.1-001; intron 1

  OTTHUMT00000037560 ; BX571672.1-002; intron 1

  OTTHUMT00000037561 ; BX571672.1-003; intron 1

  OTTHUMT00000037562 ; BX571672.1-004; intron 1

  OTTHUMT00000037573 ; BX571672.4-001; intron 1

  OTTHUMT00000037559 ; BX571672.1-001; intron 1

  OTTHUMT00000037560 ; BX571672.1-002; intron 1

  OTTHUMT00000037561 ; BX571672.1-003; intron 1

  OTTHUMT00000037562 ; BX571672.1-004; intron 1

  OTTHUMT00000037573 ; BX571672.4-001; intron 1

  ENST00000447407 ; BX571672.1-001; intron 1

  ENST00000438000 ; BX571672.1-002; intron 1

  ENST00000428930 ; BX571672.1-003; intron 1

  ENST00000436680 ; BX571672.1-004; intron 1

  ENST00000424474 ; BX571672.4-001; intron 1

  ENST00000447407 ; BX571672.1-001; intron 1

  ENST00000438000 ; BX571672.1-002; intron 1

  ENST00000428930 ; BX571672.1-003; intron 1

  ENST00000436680 ; BX571672.1-004; intron 1

  ENST00000424474 ; BX571672.4-001; intron 1

  ENST00000447407 ; BX571672.1-001; intron 1

  ENST00000438000 ; BX571672.1-002; intron 1

  ENST00000428930 ; BX571672.1-003; intron 1

  ENST00000436680 ; BX571672.1-004; intron 1

  ENST00000424474 ; BX571672.4-001; intron 1

  antisense

  OTTHUMT00000037571 ; BX571672.2-008; intron 1

  OTTHUMT00000037571 ; BX571672.2-008; intron 1

  OTTHUMT00000037571 ; BX571672.2-008; intron 1

  ENST00000422129 ; BX571672.2-008; intron 1

  ENST00000422129 ; BX571672.2-008; intron 1

  ENST00000422129 ; BX571672.2-008; intron 1

Database links

• ENTREZGENE: 100422949;MIR3118-2

Mature sequence hsa-miR-3118

• Accession: MIMAT0014980
• Sequence: 43 - ugugacugcauuaugaaaauucu - 65
• Deep sequencing: 54 reads, 3 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3118
  • MICRORNA.ORG:hsa-miR-3118
  • MIRDB:hsa-miR-3118
  • RNA22-HSA:hsa-miR-3118
  • TARGETMINER:hsa-miR-3118

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).