Stem-loop sequence ppt-MIR533a

Accession MI0003500
Previous IDs ppt-MIR533
Description Physcomitrella patens miR533a stem-loop
Gene family MIPF0000356; MIR533
Stem-loop 
           gc             ac     aga     cuu u    cc 
auggggagcug  caggcugugaggg  ggagc   guugg   g ggcu  u
|||||||||||  |||||||||||||  |||||   |||||   | ||||   
ugccucucgac  gucugacacuccu  cuucg   cgacc   c ccgg  u
           ac             -c     --a     ucc -    ug
Get sequence
Deep sequencing
7244 reads, 3 experiments
Comments

Arazi et al. identified a mature miRNA from the 5' arm of this precursor, and called it miR533 [1]. Axtell et al. show by deep sequencing that the 3' product is the predominant one [3]. The 5' miRNA is renamed miR533* here.

Genome context
Coordinates (JGI1.1) Overlapping transcripts
scaffold_89: 1180775-1180876 [-]
intergenic

Mature sequence ppt-miR533a-5p

Accession MIMAT0003137
Previous IDs ppt-miR533;ppt-miR533a;ppt-miR533a*
Sequence

6 -  

gagcuggccaggcugugaggg

 - 26

Get sequence
Deep sequencing 311 reads, 3 experiments
Evidence experimental; cloned [1]

Mature sequence ppt-miR533a-3p

Accession MIMAT0004783
Previous IDs ppt-miR533a
Sequence

79 -  

cucacagucugcacagcucuc

 - 99

Get sequence
Deep sequencing 6933 reads, 3 experiments
Evidence experimental; 454 [3]

References

1
PMID:16146523 "Cloning and characterization of micro-RNAs from moss" Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC Plant J. 43:837-848(2005).
2
PMID:17359535 "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution" Fattash I, Voss B, Reski R, Hess WR, Frank W BMC Plant Biol. 7:13(2007).
3
PMID:17601824 "Common functions for diverse small RNAs of land plants" Axtell MJ, Snyder JA, Bartel DP Plant Cell. 19:1750-1769(2007).