Stem-loop sequence mmu-mir-668

Accession

MI0004134

Symbol

MGI:Mir668

Description

Mus musculus miR-668 stem-loop

Gene family

MIPF0000357; mir-668

Stem-loop

    a   u   ---        g            
ggua gug gcc   ucggguga caugcacuuaa 
|||| ||| |||   |||||||| |||||||||| u
ccau cac cgg   ggcucacu guauguggaug 
    -   c   cuc        -            

Deep sequencing

4451 reads, 52 experiments

Genome context

• Coordinates (GRCm38): chr12: 109734732-109734797 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-668

• mmu-mir-381: chr12: 109726822-109726896 [+]
• mmu-mir-487b: chr12: 109727333-109727414 [+]
• mmu-mir-539: chr12: 109728129-109728202 [+]
• mmu-mir-544: chr12: 109729325-109729402 [+]
• mmu-mir-382: chr12: 109733771-109733846 [+]
• mmu-mir-134: chr12: 109734139-109734209 [+]
• mmu-mir-668: chr12: 109734732-109734797 [+]
• mmu-mir-485: chr12: 109734902-109734974 [+]
• mmu-mir-453: chr12: 109735619-109735700 [+]
• mmu-mir-154: chr12: 109738433-109738498 [+]
• mmu-mir-496a: chr12: 109739119-109739197 [+]
• mmu-mir-377: chr12: 109740510-109740577 [+]
• mmu-mir-541: chr12: 109742409-109742498 [+]
• mmu-mir-409: chr12: 109743158-109743236 [+]
• mmu-mir-412: chr12: 109743289-109743368 [+]
• mmu-mir-369: chr12: 109743418-109743496 [+]
• mmu-mir-410: chr12: 109743715-109743795 [+]

Database links

• ENTREZGENE: 751523;Mir668
• MGI: 3629905;Mir668

Mature sequence mmu-miR-668-5p

• Accession: MIMAT0017237
• Previous IDs: mmu-miR-668*
• Sequence: 2 - guaagugugccucgggugagcaug - 25
• Deep sequencing: 36 reads, 11 experiments
• Evidence: experimental; Solexa [4]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-668-5p
  • MIRDB:mmu-miR-668-5p
  • RNA22-MMU:mmu-miR-668-5p

Mature sequence mmu-miR-668-3p

• Accession: MIMAT0003732
• Previous IDs: mmu-miR-668
• Sequence: 43 - ugucacucggcucggcccacuacc - 66
• Deep sequencing: 4353 reads, 51 experiments
• Evidence: experimental; MPSS [1], cloned [2], RAKE [2], Solexa [3-4]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-668-3p
  • MICRORNA.ORG:mmu-miR-668-3p
  • MIRDB:mmu-miR-668-3p
  • RNA22-MMU:mmu-miR-668-3p
  • TARGETSCAN-VERT:mmu-miR-668

References

1. PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2. PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).