Stem-loop sequence mmu-mir-431

Accession MI0001524
Symbol MGI:Mir431
Description Mus musculus miR-431 stem-loop
Gene family MIPF0000142; mir-431
Stem-loop 
-----    c       u          c  u a     ----   aca 
     cguc ugcgagg gucuugcagg cg c ugcag    gcc   c
     |||| ||||||| |||||||||| || | |||||    |||    
     gcag acgcucu cgggacguuc gc g acguu    ugg   u
cuaca    a       u          u  u g     gcaa   cag
Get sequence
Deep sequencing
93955 reads, 51 experiments
Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3].

Genome context
Coordinates (GRCm38) Overlapping transcripts
chr12: 109590447-109590537 [+]
antisense
ENSMUST00000149046 ; Rtl1-201; exon 2
Clustered miRNAs
< 10kb from mmu-mir-431
mmu-mir-337 chr12: 109585789-109585885 [+]
mmu-mir-3544 chr12: 109585813-109585873 [-]
mmu-mir-540 chr12: 109586080-109586146 [+]
mmu-mir-665 chr12: 109586314-109586407 [+]
mmu-mir-3070a chr12: 109587943-109588031 [+]
mmu-mir-3070b chr12: 109588592-109588680 [+]
mmu-mir-431 chr12: 109590447-109590537 [+]
mmu-mir-433 chr12: 109591715-109591838 [+]
mmu-mir-127 chr12: 109592846-109592915 [+]
mmu-mir-434 chr12: 109594506-109594599 [+]
mmu-mir-432 chr12: 109594956-109595030 [+]
mmu-mir-3071 chr12: 109595318-109595397 [-]
mmu-mir-136 chr12: 109595327-109595388 [+]
Database links

Mature sequence mmu-miR-431-5p

Accession MIMAT0001418
Previous IDs mmu-miR-431
Sequence

13 -  

ugucuugcaggccgucaugca

 - 33

Get sequence
Deep sequencing 89447 reads, 47 experiments
Evidence experimental; PCR [1], cloned [2-3], insitu [2], Northern [2], Solexa [4-5]
Validated targets
Predicted targets

Mature sequence mmu-miR-431-3p

Accession MIMAT0004753
Previous IDs mmu-miR-431*
Sequence

56 -  

caggucgucuugcagggcuucu

 - 77

Get sequence
Deep sequencing 4485 reads, 38 experiments
Evidence experimental; cloned [3], Solexa [4-5]
Predicted targets

References

1
PMID:15854907 "RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11 locus" Davis E, Caiment F, Tordoir X, Cavaille J, Ferguson-Smith A, Cockett N, Georges M, Charlier C Curr Biol. 15:743-749(2005).
2
PMID:16566924 "Identification of new central nervous system specific mouse microRNAs" Wheeler G, Ntounia-Fousara S, Granda B, Rathjen T, Dalmay T FEBS Lett. 580:2195-2200(2006).
3
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4
PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
5
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).