Stem-loop sequence hsa-mir-7108

Accession

MI0022959 (change log)

Symbol

HGNC:MIR7108

Description

Homo sapiens miR-7108 stem-loop

Stem-loop

   g     -cc   a       ------     -       cc        
5'  ugugg   ggc ggcgggu      gggcg ggggcgg  gguggga 
    |||||   ||| |||||||      ||||| |||||||  |||||| a
3'  acacc   cug ccgccca      cccgc ccccgcc  ccgcccc 
   g     ccu   c       cucacg     g       --        

Deep sequencing

6611 reads, 101 reads per million, 115 experiments

Confidence

Annotation confidence: undefined

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr19: 2434914-2435000 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000319207 ; LMNB2-003; exon 1

  OTTHUMT00000384489 ; LMNB2-006; intron 2

  OTTHUMT00000319205 ; LMNB2-001; intron 5

  ENST00000490554 ; LMNB2-003; exon 1

  ENST00000527409 ; LMNB2-006; intron 2

  ENST00000325327 ; LMNB2-001; intron 5

  ENST00000582871 ; LMNB2-201; intron 5

Database links

• HGNC:MIR7108
• miRBase Tracker:MI0022959

Mature sequence hsa-miR-7108-5p

• Accession: MIMAT0028113
• Sequence: 1 - guguggccggcaggcgggugg - 21
• Deep sequencing: 56 reads, 25 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-7108-5p
  • miRDB:hsa-miR-7108-5p

Mature sequence hsa-miR-7108-3p

• Accession: MIMAT0028114
• Sequence: 68 - acccgcccgucuccccacag - 87
• Deep sequencing: 9 reads, 6 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-7108-3p
  • miRDB:hsa-miR-7108-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).