Stem-loop sequence hsa-mir-676

Accession

MI0016436 (change log)

Symbol

HGNC:MIR676

Description

Homo sapiens miR-676 stem-loop

Gene family

MIPF0000471; mir-676

Literature search

6 open access papers mention hsa-mir-676
(14 sentences)

Stem-loop

      ug    uu      c     uu   gaauu 
5' gca  acuc  caaccu aggac  gca     a
   |||  ||||  |||||| |||||  |||      
3' cgu  ugag  guugga uccug  cgu     a
      gu    uu      a     -u   aaggu 

Deep sequencing

997 reads, 0 reads per million, 110 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chrX: 70022857-70022923 [+]
• Overlapping transcripts:

  antisense

  OTTHUMT00000057083 ; TEX11-001; intron 9

  OTTHUMT00000359072 ; TEX11-002; intron 10

  ENST00000344304 ; TEX11-201; intron 8

  ENST00000374333 ; TEX11-001; intron 9

  ENST00000395889 ; TEX11-002; intron 10

Database links

• EntrezGene:MIR676
• HGNC:MIR676
• RNAcentral:URS000075F10F_9606
• miRBase Tracker:MI0016436

Mature sequence hsa-miR-676-5p

• Accession: MIMAT0018203
• Previous IDs: hsa-miR-676*
• Sequence: 8 - ucuucaaccucaggacuugca - 28
• Deep sequencing: 156 reads, 52 experiments
• Evidence: experimental; Illumina [1,3]
• Predicted targets:
  • TargetMiner:hsa-miR-676-5p
  • TargetScanVert:hsa-miR-676-5p
  • miRDB:hsa-miR-676-5p

Mature sequence hsa-miR-676-3p

• Accession: MIMAT0018204
• Previous IDs: hsa-miR-676
• Sequence: 43 - cuguccuaagguuguugaguu - 63
• Deep sequencing: 834 reads, 107 experiments
• Evidence: experimental; Illumina [1-3]
• Database links:
  • RNAcentral:URS00004407DC_9606
• Predicted targets:
  • TargetMiner:hsa-miR-676-3p
  • TargetScanVert:hsa-miR-676-3p
  • miRDB:hsa-miR-676-3p

References

1. PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).
2. PMID:20498841 "Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers" Liao JY, Ma LM, Guo YH, Zhang YC, Zhou H, Shao P, Chen YQ, Qu LH PLoS One. 5:e10563(2010).
3. PMID:22454130 "Transcription factors are targeted by differentially expressed miRNAs in primates" Dannemann M, Prufer K, Lizano E, Nickel B, Burbano HA, Kelso J Genome Biol Evol. 4:552-564(2012).