Stem-loop sequence hsa-mir-5705

Accession

MI0019313 (change log)

Symbol

HGNC:MIR5705

Description

Homo sapiens miR-5705 stem-loop

Stem-loop

                                          cc  g 
5' uccccauuuacacaggccaugagccccgaaacacccauc  ag a
   |||||||||||||||||||||||||||||||||||||||  || u
3' agggguaaauguguccgguacucggggcuuuguggguag  uc u
                                          --  g 

Deep sequencing

46 reads, 0 reads per million, 25 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr4: 87300495-87300583 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000253056 ; MAPK10-003; intron 1

  OTTHUMT00000253058 ; MAPK10-005; intron 1

  OTTHUMT00000361718 ; MAPK10-018; intron 1

  OTTHUMT00000361717 ; MAPK10-017; intron 1

  OTTHUMT00000361731 ; MAPK10-031; intron 1

  OTTHUMT00000361719 ; MAPK10-019; intron 1

  OTTHUMT00000361713 ; MAPK10-013; intron 2

  OTTHUMT00000361721 ; MAPK10-021; intron 2

  OTTHUMT00000361720 ; MAPK10-020; intron 3

  ENST00000310816 ; MAPK10-003; intron 1

  ENST00000361569 ; MAPK10-005; intron 1

  ENST00000502302 ; MAPK10-018; intron 1

  ENST00000513186 ; MAPK10-017; intron 1

  ENST00000504397 ; MAPK10-031; intron 1

  ENST00000512046 ; MAPK10-019; intron 1

  ENST00000513839 ; MAPK10-013; intron 2

  ENST00000511328 ; MAPK10-021; intron 2

  ENST00000503911 ; MAPK10-020; intron 3

Database links

• HGNC:MIR5705
• miRBase Tracker:MI0019313

Mature sequence hsa-miR-5705

• Accession: MIMAT0022499
• Sequence: 57 - uguuucggggcucauggccugug - 79
• Deep sequencing: 26 reads, 18 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-5705
  • TargetScanVert:hsa-miR-5705
  • miRDB:hsa-miR-5705

References

1. PMID:21980368 "MicroRNAs associated with metastatic prostate cancer" Watahiki A, Wang Y, Morris J, Dennis K, O'Dwyer HM, Gleave M, Gout PW, Wang Y PLoS One. 6:e24950(2011).