Stem-loop sequence hsa-mir-558

AccessionMI0003564 (change log)
Symbol HGNC:MIR558
DescriptionHomo sapiens miR-558 stem-loop
Gene family MIPF0000538; mir-558
Literature search

15 open access papers mention hsa-mir-558
(23 sentences)

Stem-loop
   gugugugu  g   g      u                  ua  cu     
5'         gu ugu uguggu auuuugguauaguagcuc  ga  cuau 
           || ||| |||||| ||||||||||||||||||  ||  ||| u
3'         cg gca acacca uaaaaccaugucgucgag  cu  gaua 
   ------gu  g   a      -                  uc  uu     
Get sequence
Deep sequencing
1158 reads, 134 reads per million, 145 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (GRCh38; GCA_000001405.15) Overlapping transcripts
chr2: 32532153-32532246 [+]
sense
OTTHUMT00000325210 ; YIPF4-004; exon 2
OTTHUMT00000250250 ; YIPF4-001; exon 6
ENST00000441084 ; YIPF4-004; exon 2
ENST00000238831 ; YIPF4-001; exon 6
Database links

Mature sequence hsa-miR-558

Accession MIMAT0003222
Sequence

61 - 

ugagcugcuguaccaaaau

 - 79

Get sequence
Deep sequencing10 reads, 8 experiments
Evidence experimental; RT-PCR [1], SAGE [1]
Predicted targets

References

1
PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).