Stem-loop sequence hsa-mir-509-1

AccessionMI0003196 (change log)
Previous IDshsa-mir-509
Symbol HGNC:MIR509-1
DescriptionHomo sapiens miR-509-1 stem-loop
Gene family MIPF0000130; mir-506
Literature search

31 open access papers mention hsa-mir-509-1
(197 sentences)

Stem-loop
       c   -   ug    c   - ug     a   g       --g  u 
5' caug ugu gug  guac cua c  cagac gug caaucau   ua a
   |||| ||| |||  |||| ||| |  ||||| ||| |||||||   ||  
3' guac aca uac  caug gau g  gucug cau guuagua   au a
       -   g   gu    a   g gu     -   g       aaa  u 
Get sequence
Deep sequencing
63137 reads, 259 reads per million, 81 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3]. The cloned miR-509-5p sequence from [3] includes a 1 nt extension at the 3' end (A), which is incompatible with the genome sequence.

Genome context
Coordinates (GRCh38; GCA_000001405.15) Overlapping transcripts
chrX: 147260532-147260625 [-]
intergenic
Clustered miRNAs
< 10kb from hsa-mir-509-1
hsa-mir-509-1chrX: 147260532-147260625 [-]
hsa-mir-509-3chrX: 147259652-147259726 [-]
hsa-mir-509-2chrX: 147258760-147258850 [-]
Database links

Mature sequence hsa-miR-509-5p

Accession MIMAT0004779
Sequence

20 - 

uacugcagacaguggcaauca

 - 40

Get sequence
Deep sequencing31108 reads, 45 experiments
Evidence experimental; cloned [3]
Database links
Predicted targets

Mature sequence hsa-miR-509-3p

Accession MIMAT0002881
Previous IDshsa-miR-509
Sequence

55 - 

ugauugguacgucuguggguag

 - 76

Get sequence
Deep sequencing142713 reads, 70 experiments
Evidence experimental; array-cloned [1], cloned [2-3]
Database links
Predicted targets

References

1
PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2
PMID:17573847 "Analysis of gene expression in normal and neoplastic human testis: new roles of RNA" Novotny GW, Nielsen JE, Sonne SB, Skakkebaek NE, Rajpert-De Meyts E, Leffers H Int J Androl. 30:316-326(2007).
3
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).