Stem-loop sequence hsa-mir-378b

AccessionMI0014154 (change log)
Symbol HGNC:MIR378B
DescriptionHomo sapiens miR-378b stem-loop
Gene family MIPF0000168; mir-378
Literature search

193 open access papers mention hsa-mir-378b
(917 sentences)

Stem-loop
       a  ga         g      ga 
5' gguc uu  gucuucaag cuagug  a
   |||| ||  ||||||||| ||||||  a
3' ccag aa  cggagguuc ggucac  g
       a  ga         a      ga 
Get sequence
Deep sequencing
1956213 reads, 3.96e+03 reads per million, 134 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (GRCh38; GCA_000001405.15) Overlapping transcripts
chr3: 10330229-10330285 [+]
sense
OTTHUMT00000468191 ; GHRLOS-003; intron 1
OTTHUMT00000468192 ; GHRLOS-004; intron 1
OTTHUMT00000468190 ; GHRLOS-002; intron 3
OTTHUMT00000339624 ; GHRLOS-001; intron 3
ENST00000605105 ; GHRLOS-003; intron 1
ENST00000603771 ; GHRLOS-004; intron 1
ENST00000605014 ; GHRLOS-002; intron 3
ENST00000439539 ; GHRLOS-001; intron 3
antisense
OTTHUMT00000379272 ; GHRL-018; intron 1
OTTHUMT00000379273 ; GHRL-017; intron 1
OTTHUMT00000339636 ; GHRL-012; intron 1
OTTHUMT00000339637 ; GHRL-013; intron 1
OTTHUMT00000339639 ; GHRL-015; intron 2
OTTHUMT00000339640 ; GHRL-016; intron 2
OTTHUMT00000339626 ; GHRL-002; intron 2
OTTHUMT00000339627 ; GHRL-003; intron 2
OTTHUMT00000339628 ; GHRL-004; intron 2
OTTHUMT00000339625 ; GHRL-001; intron 4
OTTHUMT00000339630 ; GHRL-006; intron 4
OTTHUMT00000339632 ; GHRL-008; intron 4
OTTHUMT00000339633 ; GHRL-009; intron 4
OTTHUMT00000339629 ; GHRL-005; intron 4
ENST00000439975 ; GHRL-018; intron 1
ENST00000446937 ; GHRL-017; intron 1
ENST00000475759 ; GHRL-012; intron 1
ENST00000476283 ; GHRL-013; intron 1
ENST00000481287 ; GHRL-015; intron 2
ENST00000491589 ; GHRL-016; intron 2
ENST00000422159 ; GHRL-002; intron 2
ENST00000449238 ; GHRL-003; intron 2
ENST00000437422 ; GHRL-004; intron 2
ENST00000450603 ; GHRL-202; intron 3
ENST00000449554 ; GHRL-201; intron 3
ENST00000335542 ; GHRL-001; intron 4
ENST00000430179 ; GHRL-006; intron 4
ENST00000287656 ; GHRL-008; intron 4
ENST00000457360 ; GHRL-009; intron 4
ENST00000429122 ; GHRL-005; intron 4
Database links

Mature sequence hsa-miR-378b

Accession MIMAT0014999
Sequence

34 - 

acuggacuuggaggcagaa

 - 52

Get sequence
Deep sequencing1956186 reads, 134 experiments
Evidence experimental; Illumina [1]
Database links
Predicted targets

References

1
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).