Stem-loop sequence hsa-mir-3176

AccessionMI0014210 (change log)
Symbol HGNC:MIR3176
DescriptionHomo sapiens miR-3176 stem-loop
Literature search

1 open access papers mention hsa-mir-3176
(1 sentences)

Stem-loop
   u    ucuccagucu  a        c  c         cac    -     
5'  ggcc          gc gcucccgg ag cucgggcca   uccc ggga 
    ||||          || |||||||| || |||||||||   |||| ||| u
3'  ccgg          cg ugggggcc uc ggguccggu   aggg cccc 
   g    ----------  g        a  a         --c    a     
Get sequence
Deep sequencing
1981 reads, 51.4 reads per million, 74 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (GRCh38; GCA_000001405.15) Overlapping transcripts
chr16: 543277-543366 [+]
sense
OTTHUMT00000139677 ; RAB11FIP3-003; intron 2
OTTHUMT00000139676 ; RAB11FIP3-002; intron 3
OTTHUMT00000313691 ; RAB11FIP3-009; intron 3
OTTHUMT00000139678 ; RAB11FIP3-004; intron 3
OTTHUMT00000109066 ; RAB11FIP3-001; intron 5
OTTHUMT00000317787 ; RAB11FIP3-010; intron 6
ENST00000495663 ; RAB11FIP3-003; intron 2
ENST00000452814 ; RAB11FIP3-002; intron 3
ENST00000449879 ; RAB11FIP3-009; intron 3
ENST00000412256 ; RAB11FIP3-004; intron 3
ENST00000450428 ; RAB11FIP3-201; intron 3
ENST00000262305 ; RAB11FIP3-001; intron 5
ENST00000434585 ; RAB11FIP3-010; intron 6
ENST00000457159 ; RAB11FIP3-202; intron 6
Clustered miRNAs
< 10kb from hsa-mir-3176
hsa-mir-5587chr16: 535316-535368 [+]
hsa-mir-3176chr16: 543277-543366 [+]
Database links

Mature sequence hsa-miR-3176

Accession MIMAT0015053
Sequence

60 - 

acuggccugggacuaccgg

 - 78

Get sequence
Deep sequencing1957 reads, 72 experiments
Evidence experimental; Illumina [1-2]
Database links
Predicted targets

References

1
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2
PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).