Stem-loop sequence ath-MIR827

Accession MI0005383
Description Arabidopsis thaliana miR827 stem-loop
Gene family MIPF0001113; MIR827_3
Stem-loop 
uuccaugaaacguuauagguuuuuuucuuucucucu     -c  u    u u          u a      c  au        ucc 
                                    ugcaa  cc ugaa g guuuguugau g uaucua ac  guugauca   u
                                    |||||  || |||| | |||||||||| | |||||| ||  ||||||||   u
                                    acguu  gg gcuu c caaacaacua c guagau ug  uagcuagu   g
-cuacgauuuuuguacuagcucuaagguucuucgcu     uu  u    u u          c a      u  gu        ugu
Get sequence
Deep sequencing
87 reads, 7 experiments
Genome context
Coordinates (TAIR10) Overlapping transcripts
chr3: 22122760-22122936 [-]
intergenic

Mature sequence ath-miR827

Accession MIMAT0004243
Sequence

106 -  

uuagaugaccaucaacaaacu

 - 126

Get sequence
Deep sequencing 85 reads, 7 experiments
Evidence experimental; 454 [1-2], cloned [2], Solexa [3]
Validated targets

References

1
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2
PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes" Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC PLoS One. 2:e219(2007).
3
PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW J Exp Bot. 61:165-177(2010).