Stem-loop sequence cel-mir-244

Accession MI0000320
Description Caenorhabditis elegans miR-244 stem-loop
Gene family MIPF0000256; mir-244
Stem-loop 
------  c  -u        cu         uac    ug     -   cau 
      cu ca  aucucaau  cuuugguug   aaag  guaug gcu   c
      || ||  ||||||||  |||||||||   ||||  ||||| |||   g
      ga gu  uagaguua  gaaaucgac   uuuc  cauac cga   a
uuuucg  u  uu        ag         --u    gu     a   aua
Get sequence
Deep sequencing
3789 reads, 6 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
I: 4684317-4684415 [-]
intergenic
Database links

Mature sequence cel-miR-244-5p

Accession MIMAT0000300
Previous IDs cel-miR-244
Sequence

16 -  

ucuuugguuguacaaagugguaug

 - 39

Get sequence
Deep sequencing 3768 reads, 6 experiments
Evidence experimental; cloned [1-2], Northern [1], Solexa [3], CLIPseq [4]
Validated targets
Predicted targets

Mature sequence cel-miR-244-3p

Accession MIMAT0015118
Previous IDs cel-miR-244*
Sequence

58 -  

uacugcuuuucagcuaaagga

 - 78

Get sequence
Deep sequencing 21 reads, 4 experiments
Evidence experimental; CLIPseq [4]
Predicted targets

References

1
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).
2
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
3
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
4
PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).