Stem-loop sequence cel-mir-230

Accession MI0000305
Description Caenorhabditis elegans miR-230 stem-loop
Gene family MIPF0000306; mir-230
Stem-loop 
uug    -         a        -      u       u   aaca 
   augu aaugccguc cuuggucg gcgauu aauauua cag    u
   |||| ||||||||| |||||||| |||||| ||||||| |||    a
   uacg uuauggcag ggaccagc uguuga uuaugau guu    g
uua    c         a        g      -       u   aaag
Get sequence
Deep sequencing
257 reads, 6 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
X: 5803857-5803954 [+]
intergenic
Clustered miRNAs
< 10kb from cel-mir-230
cel-mir-230 X: 5803857-5803954 [+]
cel-mir-791 X: 5809314-5809398 [+]
Database links

Mature sequence cel-miR-230-5p

Accession MIMAT0015113
Previous IDs cel-miR-230*
Sequence

17 -  

acuuggucggcgauuuaauauua

 - 39

Get sequence
Deep sequencing 8 reads, 3 experiments
Evidence experimental; CLIPseq [5]
Predicted targets

Mature sequence cel-miR-230-3p

Accession MIMAT0000285
Previous IDs cel-miR-230
Sequence

61 -  

guauuaguugugcgaccaggaga

 - 83

Get sequence
Deep sequencing 248 reads, 6 experiments
Evidence experimental; cloned [1,3], Northern [1], Solexa [4], CLIPseq [5]
Validated targets
Predicted targets

References

1
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).
2
PMID:12747828 "MicroRNAs and other tiny endogenous RNAs in C. elegans" Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D Curr Biol. 13:807-818(2003).
3
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
4
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
5
PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).