Stem-loop sequence hsa-mir-3184

Accession

MI0014226

Description

Homo sapiens miR-3184 stem-loop

Stem-loop

   ca  a         cuc   c    -     gga 
aag  ag cugaggggc   aga cgag cuuuu   a
|||  || |||||||||   ||| |||| |||||   a
uuc  uc gacuccccg   ucu gcuc gaaaa   a
   aa  c         -uc   c    u     gau 

Deep sequencing

82 reads, 16 experiments

Genome context

• Coordinates (GRCh37.p5): chr17: 28444104-28444178 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000447933 ; RP11-1148O4.2-001; intron 1

  ENST00000582938 ; RP11-1148O4.2-001; intron 1

  antisense

  OTTHUMT00000256121 ; CCDC55-001; intron 1

  OTTHUMT00000256122 ; CCDC55-002; intron 1

  OTTHUMT00000256123 ; CCDC55-003; intron 1

  OTTHUMT00000256121 ; CCDC55-001; intron 1

  OTTHUMT00000256122 ; CCDC55-002; intron 1

  OTTHUMT00000256123 ; CCDC55-003; intron 1

  OTTHUMT00000256124 ; CCDC55-004; exon 1

  OTTHUMT00000447916 ; NSRP1-006; intron 1

  OTTHUMT00000256121 ; NSRP1-001; intron 1

  OTTHUMT00000256123 ; NSRP1-003; intron 1

  OTTHUMT00000447917 ; NSRP1-010; intron 1

  OTTHUMT00000447918 ; NSRP1-005; intron 1

  OTTHUMT00000447919 ; NSRP1-007; intron 1

  OTTHUMT00000256122 ; NSRP1-002; intron 1

  OTTHUMT00000447920 ; NSRP1-013; intron 1

  OTTHUMT00000447921 ; NSRP1-012; intron 1

  OTTHUMT00000447922 ; NSRP1-009; exon 1

  OTTHUMT00000256124 ; NSRP1-004; intron 2

  ENST00000247026 ; NSRP1-001; intron 1

  ENST00000475652 ; NSRP1-002; intron 1

  ENST00000479218 ; NSRP1-003; intron 1

  ENST00000540900 ; NSRP1-202; intron 1

  ENST00000362201 ; MIR423-201; exon 1

  ENST00000247026 ; NSRP1-001; intron 1

  ENST00000475652 ; NSRP1-002; intron 1

  ENST00000479218 ; NSRP1-003; intron 1

  ENST00000467446 ; NSRP1-004; exon 1

  ENST00000540900 ; NSRP1-202; intron 1

  ENST00000362201 ; MIR423-201; exon 1

  ENST00000584423 ; NSRP1-006; intron 1

  ENST00000247026 ; NSRP1-001; intron 1

  ENST00000540900 ; NSRP1-003; intron 1

  ENST00000584154 ; NSRP1-010; intron 1

  ENST00000394826 ; NSRP1-005; intron 1

  ENST00000479218 ; NSRP1-007; intron 1

  ENST00000475652 ; NSRP1-002; intron 1

  ENST00000584317 ; NSRP1-013; intron 1

  ENST00000583301 ; NSRP1-012; intron 1

  ENST00000467446 ; NSRP1-009; exon 1

  ENST00000362201 ; MIR423-201; exon 1

  ENST00000577289 ; NSRP1-004; intron 2

Clustered miRNAs

< 10kb from hsa-mir-3184

• hsa-mir-3184: chr17: 28444104-28444178 [-]
• hsa-mir-423: chr17: 28444097-28444190 [+]

Database links

• ENTREZGENE: 100423003;MIR3184

Mature sequence hsa-miR-3184-5p

• Accession: MIMAT0015064
• Previous IDs: hsa-miR-3184
• Sequence: 10 - ugaggggccucagaccgagcuuuu - 33
• Deep sequencing: 80 reads, 14 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3184-5p
  • MICRORNA.ORG:hsa-miR-3184-5p
  • MIRDB:hsa-miR-3184-5p
  • RNA22-HSA:hsa-miR-3184-5p
  • TARGETMINER:hsa-miR-3184-5p

Mature sequence hsa-miR-3184-3p

• Accession: MIMAT0022731
• Sequence: 44 - aaagucucgcucucugccccuca - 66
• Evidence: not experimental
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3184-3p
  • MIRDB:hsa-miR-3184-3p
  • TARGETMINER:hsa-miR-3184-3p

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).