Stem-loop sequence mmu-mir-3108

Accession

MI0014105 (change log)

Symbol

MGI:Mir3108

Description

Mus musculus miR-3108 stem-loop

Literature search

1 open access papers mention mmu-mir-3108
(1 sentences)

Stem-loop

      aa  -a   u     a g       uu      a uu 
5' cac  cc  ggg cucua a cuagacg  ccggag a  u
   |||  ||  ||| ||||| | |||||||  |||||| |   
3' gug  gg  cuc gagau u gaucugc  ggcuuu u  u
      aa  aa   u     c g       --      a uu 

Deep sequencing

184 reads, 50.9 reads per million, 55 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr8: 108936860-108936938 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000107189 ; Zfhx3-001; intron 7

  ENSMUST00000043896 ; Zfhx3-001; intron 7

Database links

• EntrezGene:Mir3108
• MGI:Mir3108
• RNAcentral:URS000075D142_10090
• miRBase Tracker:MI0014105

Mature sequence mmu-miR-3108-5p

• Accession: MIMAT0014947
• Previous IDs: mmu-miR-3108
• Sequence: 11 - gucucuaaagcuagacguuccgg - 33
• Deep sequencing: 138 reads, 46 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00005F0B8F_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3108-5p
  • miRDB:mmu-miR-3108-5p

Mature sequence mmu-miR-3108-3p

• Accession: MIMAT0014948
• Previous IDs: mmu-miR-3108*
• Sequence: 52 - cgucuaggucuagagucucaa - 72
• Deep sequencing: 8 reads, 8 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-3108-3p
  • miRDB:mmu-miR-3108-3p

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).