Stem-loop sequence cel-mir-2220

Accession MI0010973
Description Caenorhabditis elegans miR-2220 stem-loop
Stem-loop 
--     a        u   u     uuc 
  guaag ccauaaac auu aucaa   a
  ||||| |||||||| ||| |||||    
  cauuc gguguuug uaa uaguu   u
ga     a        u   c     uac
Get sequence
Deep sequencing
3 reads, 2 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
X: 1873821-1873878 [+]
intergenic
Clustered miRNAs
< 10kb from cel-mir-2220
cel-mir-4807 X: 1872460-1872520 [+]
cel-mir-4808 X: 1872946-1873002 [+]
cel-mir-4809 X: 1873640-1873698 [+]
cel-mir-2220 X: 1873821-1873878 [+]
cel-mir-4810 X: 1875732-1875788 [+]
cel-mir-1018 X: 1879452-1879507 [+]
cel-mir-4925 X: 1879556-1879614 [+]
cel-mir-4923b X: 1879634-1879692 [+]
cel-mir-4923a X: 1879870-1879930 [+]
cel-mir-4921 X: 1879973-1880032 [+]

Mature sequence cel-miR-2220-5p

Accession MIMAT0011461
Previous IDs cel-miR-2220*
Sequence

1 -  

guaagaccauaaacuauuuauc

 - 22

Get sequence
Evidence experimental; Solexa [1]
Predicted targets

Mature sequence cel-miR-2220-3p

Accession MIMAT0011462
Previous IDs cel-miR-2220
Sequence

37 -  

ucaauuguuuguggacuuacag

 - 58

Get sequence
Deep sequencing 3 reads, 2 experiments
Evidence experimental; Solexa [1]
Predicted targets

References

1
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).