Stem-loop sequence cel-mir-2209c

Accession MI0010959
Description Caenorhabditis elegans miR-2209c stem-loop
Stem-loop 
--g          cac     g     aaacu 
   aguguaaccg   gucuu uuuca     c
   ||||||||||   ||||| |||||      
   ucacauuggc   cagaa aaggu     a
aca          cac     a     auaua
Get sequence
Deep sequencing
4 reads, 2 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
IV: 1027218-1027281 [+]
intergenic
Clustered miRNAs
< 10kb from cel-mir-2209c
cel-mir-2209b IV: 1021303-1021365 [-]
cel-mir-2208a IV: 1021772-1021832 [+]
cel-mir-2208b IV: 1026580-1026640 [+]
cel-mir-2209a IV: 1027101-1027164 [+]
cel-mir-2209c IV: 1027218-1027281 [+]

Mature sequence cel-miR-2209c-5p

Accession MIMAT0011433
Previous IDs cel-miR-2209c*
Sequence

1 -  

gaguguaaccgcacgucuuguuu

 - 23

Get sequence
Deep sequencing 1 reads, 1 experiments
Evidence experimental; Solexa [1]
Predicted targets

Mature sequence cel-miR-2209c-3p

Accession MIMAT0011434
Previous IDs cel-miR-2209c
Sequence

42 -  

aaaagaccaccgguuacacuaca

 - 64

Get sequence
Deep sequencing 3 reads, 1 experiments
Evidence experimental; Solexa [1]
Predicted targets

References

1
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).