Stem-loop sequence hsa-mir-1302-1

Accession

MI0006362

Symbol

HGNC:MIR1302-1

Description

Homo sapiens miR-1302-1 stem-loop

Gene family

MIPF0000456; mir-1302

Stem-loop

--   aaag  c     a            ag   a   u        gug  -      a  a     uac 
  cag    cc aguua auuugaauuuca  uaa caa gaauaauu   ua uguaag au uccca   a
  |||    || ||||| ||||||||||||  ||| ||| ||||||||   || |||||| || |||||   a
  guc    gg ucaau uaaacuuaaagu  auu guu cuuauuaa   au guauuc ua agggu   u
au   cuua  a     g            cu   c   c        -aa  c      a  c     uua 

Deep sequencing

5 reads, 3 experiments

Genome context

• Coordinates (GRCh37.p5): chr12: 113132839-113132981 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000405890 ; RPH3A-023; intron 1

  OTTHUMT00000405774 ; RPH3A-013; intron 1

  OTTHUMT00000405811 ; RPH3A-021; intron 1

  OTTHUMT00000405893 ; RPH3A-022; intron 1

  OTTHUMT00000405890 ; RPH3A-023; intron 1

  OTTHUMT00000405774 ; RPH3A-013; intron 1

  OTTHUMT00000405811 ; RPH3A-021; intron 1

  OTTHUMT00000405893 ; RPH3A-022; intron 1

  OTTHUMT00000405890 ; RPH3A-023; intron 1

  OTTHUMT00000405774 ; RPH3A-013; intron 1

  OTTHUMT00000405811 ; RPH3A-021; intron 1

  OTTHUMT00000405893 ; RPH3A-022; intron 1

  OTTHUMT00000405894 ; RPH3A-026; intron 2

  OTTHUMT00000405894 ; RPH3A-026; intron 2

  OTTHUMT00000405894 ; RPH3A-026; intron 2

  OTTHUMT00000405777 ; RPH3A-015; intron 3

  OTTHUMT00000405776 ; RPH3A-014; intron 3

  OTTHUMT00000405892 ; RPH3A-024; intron 3

  OTTHUMT00000405777 ; RPH3A-015; intron 3

  OTTHUMT00000405776 ; RPH3A-014; intron 3

  OTTHUMT00000405892 ; RPH3A-024; intron 3

  OTTHUMT00000405777 ; RPH3A-015; intron 3

  OTTHUMT00000405776 ; RPH3A-014; intron 3

  OTTHUMT00000405892 ; RPH3A-024; intron 3

  OTTHUMT00000405891 ; RPH3A-025; intron 4

  OTTHUMT00000405891 ; RPH3A-025; intron 4

  OTTHUMT00000405891 ; RPH3A-025; intron 4

  ENST00000548197 ; RPH3A-023; intron 1

  ENST00000543106 ; RPH3A-013; intron 1

  ENST00000551593 ; RPH3A-021; intron 1

  ENST00000547840 ; RPH3A-022; intron 1

  ENST00000548197 ; RPH3A-023; intron 1

  ENST00000543106 ; RPH3A-013; intron 1

  ENST00000551593 ; RPH3A-021; intron 1

  ENST00000547840 ; RPH3A-022; intron 1

  ENST00000548197 ; RPH3A-023; intron 1

  ENST00000543106 ; RPH3A-013; intron 1

  ENST00000551593 ; RPH3A-021; intron 1

  ENST00000547840 ; RPH3A-022; intron 1

  ENST00000546703 ; RPH3A-026; intron 2

  ENST00000546703 ; RPH3A-026; intron 2

  ENST00000546703 ; RPH3A-026; intron 2

  ENST00000549736 ; RPH3A-015; intron 3

  ENST00000547686 ; RPH3A-014; intron 3

  ENST00000551748 ; RPH3A-024; intron 3

  ENST00000549736 ; RPH3A-015; intron 3

  ENST00000547686 ; RPH3A-014; intron 3

  ENST00000551748 ; RPH3A-024; intron 3

  ENST00000549736 ; RPH3A-015; intron 3

  ENST00000547686 ; RPH3A-014; intron 3

  ENST00000551748 ; RPH3A-024; intron 3

  ENST00000546426 ; RPH3A-025; intron 4

  ENST00000546426 ; RPH3A-025; intron 4

  ENST00000546426 ; RPH3A-025; intron 4

Database links

• ENTREZGENE: 100302227;MIR1302-1
• HGNC: 35293;MIR1302-1

Mature sequence hsa-miR-1302

• Accession: MIMAT0005890
• Sequence: 75 - uugggacauacuuaugcuaaa - 95
• Deep sequencing: 18 reads, 1 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-1302
  • MICRORNA.ORG:hsa-miR-1302
  • MIRDB:hsa-miR-1302
  • RNA22-HSA:hsa-miR-1302
  • TARGETMINER:hsa-miR-1302
  • TARGETSCAN-VERT:hsa-miR-1302

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).