Stem-loop sequence hsa-mir-320c-1

AccessionMI0003778
Symbol HGNC:MIR320C1
DescriptionHomo sapiens miR-320c-1 stem-loop
Gene family MIPF0000163; mir-320
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled Mir-320. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

In molecular biology mir-320 microRNA is a short RNA molecule. MicroRNAs function to regulate the expression levels of other genes by several mechanisms.

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Stem-loop
   u        --aaaaugag        uu       c    cag 
5'  uugcauua          gccuucuc  cccaguu uucc   a
    ||||||||          ||||||||  ||||||| ||||    
3'  gauguagu          ugggagag  gggucga aagg   g
   g        aaaaaaaaga        uu       a    acu 
Get sequence
Deep sequencing
42658 reads, 4.98e+03 reads per million, 79 experiments
Confidence
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Comments

This sequence was identified as a candidate by RAKE analysis [1], and later confirmed by Solexa sequencing [2].

Genome context
Coordinates (GRCh38) Overlapping transcripts
chr18: 21683510-21683597 [+]
sense
OTTHUMT00000446105 ; TTC39C-002; intron 6
OTTHUMT00000446107 ; TTC39C-001; intron 6
ENST00000304621 ; TTC39C-002; intron 6
ENST00000317571 ; TTC39C-001; intron 6
Database links

Mature sequence hsa-miR-320c

Accession MIMAT0005793
Sequence

50 - 

aaaagcuggguugagagggu

 - 69

Get sequence
Deep sequencing3540 reads, 56 experiments
Evidence experimental; Illumina [1]
Predicted targets

References

1
PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
2
PMID:18392026 "Discovering microRNAs from deep sequencing data using miRDeep" Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N Nat Biotechnol. 26:407-415(2008).